Wall clock time and date at job start Mon Mar 30 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00025 * 2 1 4 4 H 1.48504 * 109.47026 * 239.99522 * 3 2 1 5 5 H 1.48497 * 109.47504 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47153 * 119.99714 * 3 2 1 7 7 C 1.37876 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00455 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.50703 * 115.54928 * 325.57659 * 9 7 2 11 11 C 1.38230 * 119.97967 * 114.48760 * 10 9 7 12 12 C 1.38444 * 120.03610 * 180.02562 * 11 10 9 13 13 F 1.35096 * 120.00209 * 179.97438 * 12 11 10 14 14 C 1.38446 * 119.99822 * 359.97438 * 12 11 10 15 15 C 1.38379 * 119.96293 * 0.02562 * 14 12 11 16 16 F 1.35100 * 120.01909 * 180.02562 * 15 14 12 17 17 C 1.38276 * 119.98350 * 294.76861 * 10 9 7 18 18 Cl 1.73602 * 120.00028 * 359.97438 * 17 10 9 19 19 C 1.52998 * 117.50131 * 111.24732 * 9 7 2 20 20 C 1.53002 * 117.50118 * 179.90766 * 9 7 2 21 21 H 0.97007 * 119.99965 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.98774 * 359.97438 * 11 10 9 23 23 H 1.08002 * 120.02053 * 180.02562 * 14 12 11 24 24 H 1.09002 * 117.50019 * 215.00085 * 19 9 7 25 25 H 1.09000 * 117.49733 * 0.02562 * 19 9 7 26 26 H 1.09002 * 117.49775 * 359.97438 * 20 9 7 27 27 H 1.09005 * 117.49706 * 144.99130 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 -0.0456 -2.5011 0.7687 11 6 -1.2439 -2.6702 0.1007 12 6 -2.4357 -2.6717 0.8051 13 9 -3.6065 -2.8365 0.1515 14 6 -2.4277 -2.5041 2.1794 15 6 -1.2281 -2.3348 2.8480 16 9 -1.2190 -2.1717 4.1891 17 6 -0.0363 -2.3278 2.1405 18 17 1.4687 -2.1088 2.9776 19 6 1.3242 -3.3572 -1.2641 20 6 2.0731 -3.7896 -0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 -1.2505 -2.8005 -0.9714 23 1 -3.3573 -2.5056 2.7293 24 1 0.4345 -3.9231 -1.5405 25 1 1.9177 -2.9779 -2.0960 26 1 3.1589 -3.6945 -0.0025 27 1 1.6761 -4.6398 0.5536 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259883584.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:04 Heat of formation + Delta-G solvation = -59.386315 kcal Electronic energy + Delta-G solvation = -17219.571678 eV Core-core repulsion = 14025.611180 eV Total energy + Delta-G solvation = -3193.960498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.96035 -49.89857 -40.29020 -37.46984 -37.06764 -34.11775 -31.36744 -30.87534 -27.63487 -24.65086 -23.88993 -22.63513 -21.29481 -19.27885 -18.12412 -17.64570 -17.52634 -16.97053 -16.57892 -16.54886 -16.25706 -15.64155 -15.30566 -14.94843 -14.11049 -13.79727 -13.53720 -13.19530 -12.90751 -12.81853 -12.76997 -12.30091 -12.03799 -11.95698 -11.68330 -11.45298 -11.01794 -10.73587 -10.27113 -9.62434 -9.31358 -8.00057 -6.11071 0.06133 0.25491 1.38556 1.43563 1.46876 1.50792 2.43206 2.52603 2.93365 3.03638 3.43955 3.70917 3.73675 4.04983 4.17591 4.48086 4.65493 4.70605 4.76695 4.90703 4.97702 5.09109 5.18970 5.40623 5.53110 5.64210 5.76659 5.89599 6.34798 6.83150 7.48150 8.95500 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.010605 C = 0.009839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.901632 B = 2639.600811 C = 2845.173012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.483 4.483 8 H 0.057 0.943 9 C 0.044 3.956 10 C 0.098 3.902 11 C -0.132 4.132 12 C 0.123 3.877 13 F -0.135 7.135 14 C -0.200 4.200 15 C 0.115 3.885 16 F -0.132 7.132 17 C -0.082 4.082 18 Cl -0.053 7.053 19 C -0.194 4.194 20 C -0.175 4.175 21 H 0.260 0.740 22 H 0.137 0.863 23 H 0.170 0.830 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -5.466 2.568 6.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.520 4.520 8 H 0.075 0.925 9 C 0.044 3.956 10 C 0.096 3.904 11 C -0.151 4.151 12 C 0.103 3.897 13 F -0.114 7.114 14 C -0.219 4.219 15 C 0.095 3.905 16 F -0.110 7.110 17 C -0.110 4.110 18 Cl -0.024 7.024 19 C -0.232 4.232 20 C -0.213 4.213 21 H 0.069 0.931 22 H 0.155 0.845 23 H 0.188 0.812 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.968 -5.297 2.669 6.632 hybrid contribution 0.370 1.249 0.112 1.307 sum -2.597 -4.048 2.781 5.556 Atomic orbital electron populations 1.69936 1.06267 1.26798 1.49757 1.25370 0.95463 1.01022 0.94298 0.85962 0.78737 0.80551 0.78599 1.19753 1.21490 1.20311 1.20479 0.92093 0.88719 1.50755 0.92500 1.17805 0.90879 0.91270 0.95661 1.18660 0.95014 0.87149 0.89572 1.20825 0.90030 1.03464 1.00785 1.17180 0.81082 1.01665 0.89736 1.91468 1.45705 1.92981 1.81234 1.20761 0.98089 1.09750 0.93327 1.16981 0.92629 1.03561 0.77313 1.91473 1.97279 1.93107 1.29171 1.20733 0.86627 1.10142 0.93497 1.98308 1.31441 1.95640 1.77005 1.23155 1.02094 1.05404 0.92566 1.22918 0.98335 0.98261 1.01740 0.93051 0.84541 0.81249 0.89570 0.90044 0.89595 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.86 10.88 21.45 0.23 -45.63 15 2 C 0.04 2.02 5.37 84.65 0.45 2.47 15 3 Si 0.93 41.47 29.54 68.60 2.03 43.50 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 7 C -0.48 -23.80 7.97 25.60 0.20 -23.60 15 8 H 0.06 2.84 7.81 -2.91 -0.02 2.82 15 9 C 0.04 1.95 1.35 -53.67 -0.07 1.87 15 10 C 0.10 4.20 3.05 -19.86 -0.06 4.14 15 11 C -0.13 -5.28 8.54 22.32 0.19 -5.08 15 12 C 0.12 4.47 7.30 22.37 0.16 4.63 15 13 F -0.14 -4.58 17.27 44.97 0.78 -3.81 15 14 C -0.20 -6.85 10.00 22.35 0.22 -6.63 15 15 C 0.12 4.42 7.27 22.39 0.16 4.59 15 16 F -0.13 -4.82 16.84 44.97 0.76 -4.07 15 17 C -0.08 -3.46 6.27 22.36 0.14 -3.32 15 18 Cl -0.05 -2.20 26.78 -2.72 -0.07 -2.27 15 19 C -0.19 -7.55 9.43 30.62 0.29 -7.26 15 20 C -0.18 -6.65 9.94 30.62 0.30 -6.34 15 21 H 0.26 13.27 8.31 -92.70 -0.77 12.50 15 22 H 0.14 5.32 7.02 -2.91 -0.02 5.30 15 23 H 0.17 4.67 8.06 -2.91 -0.02 4.64 15 24 H 0.09 3.03 7.13 -2.39 -0.02 3.02 15 25 H 0.08 3.18 8.14 -2.39 -0.02 3.17 15 26 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 27 H 0.09 2.98 8.14 -2.38 -0.02 2.96 15 Total: -1.00 -51.07 261.87 6.93 -44.14 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.21 Total: 2.66 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 2.00 Total: -34.53 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.23 Total: -45.63 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.53 Total: -7.88 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.07 Total: -2.27 kcal Total: -51.07 6.93 -44.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883584.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.242 kcal (2) G-P(sol) polarization free energy of solvation -51.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds