Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 N 1.46506 * 109.46931 * 179.97438 * 3 2 1 5 5 N 1.28465 * 124.86375 * 90.03130 * 4 3 2 6 6 C 1.32766 * 109.96016 * 179.97438 * 5 4 3 7 7 C 1.41418 * 126.56568 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00688 * 186.08137 * 7 6 5 9 9 C 1.39855 * 119.99705 * 6.08222 * 7 6 5 10 10 N 1.30895 * 120.00051 * 184.06492 * 9 7 6 11 11 Si 1.86805 * 120.00014 * 4.07087 * 9 7 6 12 12 H 1.48497 * 109.47033 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.46743 * 299.99868 * 11 9 7 14 14 H 1.48504 * 109.46983 * 59.99628 * 11 9 7 15 15 C 1.42214 * 106.87603 * 0.25906 * 6 5 4 16 16 C 1.35191 * 105.54028 * 359.58171 * 15 6 5 17 17 Br 1.89099 * 126.32758 * 180.14379 * 16 15 6 18 18 H 1.08995 * 109.47347 * 300.00536 * 1 2 3 19 19 H 1.09004 * 109.46980 * 59.99925 * 1 2 3 20 20 H 1.08997 * 109.47482 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46865 * 239.99846 * 2 1 3 22 22 H 1.09004 * 109.46980 * 120.00075 * 2 1 3 23 23 H 1.08999 * 109.46795 * 60.00205 * 3 2 1 24 24 H 1.08998 * 109.47380 * 299.99641 * 3 2 1 25 25 H 0.97001 * 119.99574 * 354.84040 * 10 9 7 26 26 H 1.08002 * 127.23437 * 179.74580 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 7 4.2399 1.4427 -1.0531 6 6 5.5227 1.4430 -0.7111 7 6 6.6294 1.4430 -1.5916 8 1 7.6310 1.3442 -1.2001 9 6 6.4266 1.5709 -2.9695 10 7 7.4428 1.4911 -3.7907 11 14 4.7057 1.8558 -3.6379 12 1 4.7601 1.9564 -5.1184 13 1 3.8300 0.7208 -3.2502 14 1 4.1590 3.1171 -3.0761 15 6 5.5711 1.4367 0.7102 16 6 4.2817 1.4425 1.1165 17 35 3.6711 1.4422 2.9062 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6767 1.9562 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 8.3445 1.4183 -3.4408 26 1 6.4527 1.4313 1.3340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884356.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = 33.299337 kcal Electronic energy + Delta-G solvation = -12169.932540 eV Core-core repulsion = 9908.943774 eV Total energy + Delta-G solvation = -2260.988766 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.81027 -36.57063 -35.30244 -33.09661 -32.49321 -30.03182 -28.74131 -25.75534 -22.86874 -21.88981 -21.63022 -19.45408 -18.01743 -16.47714 -16.16098 -15.60962 -15.58418 -14.58081 -14.40685 -14.04035 -13.48742 -13.12659 -12.99311 -12.81807 -12.55269 -12.33518 -12.02516 -11.74994 -11.61817 -11.46261 -11.20196 -10.42920 -9.84211 -9.60629 -9.18656 -6.55812 0.25699 1.04554 1.45413 1.48929 1.83797 2.07603 2.20008 2.46601 3.28602 3.67615 3.88628 4.21872 4.23344 4.47127 4.62684 4.73382 4.83583 4.94750 5.08515 5.15135 5.30984 5.35680 5.61945 6.01930 6.32829 6.43918 6.89262 7.66058 8.19678 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.009410 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.960518 B = 2974.842666 C = 3892.935041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.113 3.887 4 N -0.302 5.302 5 N -0.409 5.409 6 C 0.166 3.834 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.015 3.985 10 N -0.867 5.867 11 Si 1.147 2.853 12 H -0.304 1.304 13 H -0.267 1.267 14 H -0.285 1.285 15 C -0.270 4.270 16 C 0.021 3.979 17 Br 0.031 6.969 18 H 0.075 0.925 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.114 0.886 24 H 0.096 0.904 25 H 0.274 0.726 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 -0.684 12.851 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.086 5.086 5 N -0.246 5.246 6 C 0.019 3.981 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.197 4.197 10 N -0.496 5.496 11 Si 0.975 3.025 12 H -0.233 1.233 13 H -0.193 1.193 14 H -0.212 1.212 15 C -0.302 4.302 16 C -0.185 4.185 17 Br 0.112 6.888 18 H 0.093 0.907 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.132 0.868 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.218 -0.543 11.207 19.721 hybrid contribution 2.493 -0.210 1.676 3.011 sum -13.725 -0.753 12.884 18.840 Atomic orbital electron populations 1.21652 0.91513 1.03279 1.03197 1.21868 0.98806 0.94488 1.02170 1.22214 0.72882 1.00086 1.05499 1.45585 1.07261 1.55022 1.00759 1.73105 1.03210 1.36234 1.12022 1.19581 0.90402 0.95764 0.92352 1.19697 0.92208 1.51310 0.93167 0.92337 1.28005 1.08604 0.89438 0.93670 1.70698 1.01037 1.39030 1.38802 0.82287 0.69679 0.78794 0.71789 1.23311 1.19338 1.21230 1.21592 0.95412 1.18335 0.94907 1.23158 0.92773 1.14588 0.87952 1.96556 1.88887 1.98148 1.05202 0.90652 0.91766 0.91112 0.93359 0.91612 0.86806 0.88524 0.91617 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.70 15 2 C -0.13 -3.52 6.26 30.59 0.19 -3.33 15 3 C 0.11 3.37 6.09 86.38 0.53 3.90 15 4 N -0.30 -12.52 3.32 -341.83 -1.14 -13.65 15 5 N -0.41 -20.71 7.29 -51.62 -0.38 -21.08 15 6 C 0.17 9.06 6.52 40.77 0.27 9.33 15 7 C -0.52 -31.21 9.85 23.44 0.23 -30.98 15 8 H 0.06 3.58 8.05 -2.91 -0.02 3.56 15 9 C 0.01 0.87 5.52 85.22 0.47 1.34 15 10 N -0.87 -51.83 13.66 21.81 0.30 -51.53 15 11 Si 1.15 57.80 25.91 68.60 1.78 59.58 15 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 15 13 H -0.27 -13.20 6.76 99.48 0.67 -12.52 15 14 H -0.29 -14.18 7.11 99.48 0.71 -13.47 15 15 C -0.27 -12.64 10.95 22.56 0.25 -12.39 15 16 C 0.02 0.84 7.34 83.35 0.61 1.45 15 17 Br 0.03 0.86 33.29 -20.37 -0.68 0.18 15 18 H 0.07 1.05 8.14 -2.39 -0.02 1.03 15 19 H 0.06 1.06 8.14 -2.38 -0.02 1.04 15 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.07 1.73 8.14 -2.38 -0.02 1.71 15 23 H 0.11 2.72 7.57 -2.39 -0.02 2.70 15 24 H 0.10 2.80 8.14 -2.39 -0.02 2.79 15 25 H 0.27 16.00 8.72 -92.71 -0.81 15.19 15 26 H 0.15 6.33 8.06 -2.91 -0.02 6.31 15 Total: -1.00 -66.24 248.13 4.24 -62.00 By element: Atomic # 1 Polarization: -4.21 SS G_CDS: 1.10 Total: -3.11 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.26 Total: -32.38 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.21 Total: -86.27 kcal Atomic # 14 Polarization: 57.80 SS G_CDS: 1.78 Total: 59.58 kcal Atomic # 35 Polarization: 0.86 SS G_CDS: -0.68 Total: 0.18 kcal Total: -66.24 4.24 -62.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884356.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.297 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds