Wall clock time and date at job start Mon Mar 30 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47567 * 240.00286 * 3 2 1 5 5 H 1.48492 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47063 * 120.00100 * 3 2 1 7 7 C 1.37879 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.93496 * 99.98012 * 10 9 7 12 12 C 1.38511 * 120.07577 * 179.97438 * 11 10 9 13 13 C 1.39261 * 119.87551 * 0.04476 * 12 11 10 14 14 C 1.38588 * 119.84861 * 359.97268 * 13 12 11 15 15 Cl 1.73604 * 120.00007 * 179.97438 * 14 13 12 16 16 C 1.38394 * 119.93588 * 279.99961 * 10 9 7 17 17 F 1.35096 * 119.96037 * 359.97438 * 16 10 9 18 18 O 1.36532 * 108.64022 * 179.97438 * 13 12 11 19 19 C 1.43985 * 105.48724 * 17.29003 * 18 13 12 20 20 O 1.36555 * 131.49840 * 180.02562 * 12 11 10 21 21 H 0.96998 * 120.00310 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47535 * 60.00498 * 9 7 2 23 23 H 1.08995 * 109.47504 * 299.99755 * 9 7 2 24 24 H 1.07995 * 119.96135 * 0.04264 * 11 10 9 25 25 H 1.09005 * 110.56890 * 214.29954 * 19 18 13 26 26 H 1.09004 * 110.56847 * 91.43250 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.5208 -4.3041 1.1797 12 6 3.4200 -5.3577 1.1829 13 6 4.0318 -5.7511 -0.0046 14 6 3.7379 -5.0871 -1.1849 15 17 4.4988 -5.5738 -2.6675 16 6 2.8373 -4.0343 -1.1816 17 9 2.5508 -3.3877 -2.3327 18 8 4.8660 -6.7989 0.2606 19 6 4.4510 -7.3058 1.5428 20 8 3.8708 -6.1593 2.1923 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.0452 -3.9981 2.0997 25 1 5.3095 -7.6716 2.1061 26 1 3.7078 -8.0937 1.4208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892343.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:44 Heat of formation + Delta-G solvation = -92.115987 kcal Electronic energy + Delta-G solvation = -16724.871497 eV Core-core repulsion = 13517.118944 eV Total energy + Delta-G solvation = -3207.752553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.33203 -42.06231 -37.76240 -36.54615 -36.01334 -33.34410 -31.08606 -29.66404 -27.38754 -25.55966 -23.63976 -22.80102 -21.35916 -18.26795 -17.68071 -17.46047 -16.47194 -16.43635 -15.39315 -15.05936 -14.96589 -14.62629 -14.27633 -13.96973 -12.97128 -12.83200 -12.64011 -12.50401 -12.29502 -11.70581 -11.53658 -11.22872 -10.93205 -10.71750 -10.64586 -10.31365 -9.82466 -9.44723 -8.50221 -8.39760 -7.69145 -6.12533 -4.17488 1.15308 1.25486 2.13809 2.72489 3.30331 3.34197 3.37311 3.40605 3.62106 4.39518 4.55071 4.64969 4.70383 4.86184 5.20013 5.24123 5.31927 5.50700 5.83141 6.07759 6.28993 6.46229 6.72492 7.15613 7.35343 7.45984 7.81067 8.14019 8.85070 9.47092 10.97364 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.006756 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.130855 B = 4143.766523 C = 4793.650913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.054 3.946 10 C -0.043 4.043 11 C -0.073 4.073 12 C 0.032 3.968 13 C 0.035 3.965 14 C -0.057 4.057 15 Cl -0.049 7.049 16 C 0.118 3.882 17 F -0.109 7.109 18 O -0.300 6.300 19 C 0.213 3.787 20 O -0.305 6.305 21 H 0.265 0.735 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.149 0.851 25 H 0.130 0.870 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -13.032 1.273 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.017 3.983 10 C -0.045 4.045 11 C -0.092 4.092 12 C -0.012 4.012 13 C -0.010 4.010 14 C -0.086 4.086 15 Cl -0.021 7.021 16 C 0.097 3.903 17 F -0.087 7.087 18 O -0.217 6.217 19 C 0.101 3.899 20 O -0.221 6.221 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.167 0.833 25 H 0.147 0.853 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.452 -13.013 1.207 14.575 hybrid contribution 0.658 0.708 -0.252 0.998 sum 7.109 -12.305 0.955 14.244 Atomic orbital electron populations 1.69924 1.06037 1.27242 1.49718 1.24954 0.94899 0.99284 0.94741 0.86551 0.79557 0.82500 0.78881 1.19985 1.21131 1.20058 1.20918 0.93025 0.89454 1.52213 0.92348 1.18368 0.91968 0.88264 0.99653 1.20613 0.98060 0.96825 0.88956 1.20027 0.96120 0.93437 0.99610 1.19625 0.99325 0.97559 0.84709 1.18736 0.95399 0.93886 0.92972 1.19657 1.02221 1.00420 0.86255 1.98353 1.80431 1.90951 1.32322 1.16730 0.97687 0.92091 0.83788 1.91556 1.91716 1.79418 1.46053 1.87372 1.52166 1.44790 1.37328 1.25595 0.97738 0.88244 0.78304 1.87371 1.74083 1.31686 1.28969 0.92564 0.93975 0.94098 0.83292 0.85262 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.52 -13.98 9.09 -34.44 -0.31 -14.29 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.31 4.82 -29.03 -0.14 1.17 15 10 C -0.04 -0.89 5.08 -104.54 -0.53 -1.42 15 11 C -0.07 -1.31 9.68 -39.46 -0.38 -1.69 15 12 C 0.03 0.54 7.15 -39.10 -0.28 0.26 15 13 C 0.04 0.60 6.93 -39.07 -0.27 0.32 15 14 C -0.06 -1.03 6.33 -39.34 -0.25 -1.28 15 15 Cl -0.05 -0.81 28.61 -51.86 -1.48 -2.29 15 16 C 0.12 2.36 7.20 -39.41 -0.28 2.08 15 17 F -0.11 -2.34 16.21 2.25 0.04 -2.30 15 18 O -0.30 -4.43 11.40 -45.80 -0.52 -4.95 15 19 C 0.21 2.33 8.89 101.05 0.90 3.22 15 20 O -0.30 -4.43 11.40 -45.87 -0.52 -4.95 15 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 22 H 0.04 1.09 7.94 -51.93 -0.41 0.68 15 23 H 0.04 1.00 8.00 -51.93 -0.42 0.59 15 24 H 0.15 2.44 8.03 -52.49 -0.42 2.02 15 25 H 0.13 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 15 LS Contribution 258.72 15.07 3.90 3.90 Total: -1.00 -29.13 258.72 -6.16 -35.29 By element: Atomic # 1 Polarization: -4.51 SS G_CDS: -1.64 Total: -6.15 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.65 Total: -9.97 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.74 Total: -24.69 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.90 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.13 -6.16 -35.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892343.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.824 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds