Wall clock time and date at job start Mon Mar 30 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47567 * 240.00286 * 3 2 1 5 5 H 1.48492 * 109.47448 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47063 * 120.00100 * 3 2 1 7 7 C 1.37879 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.38283 * 119.93496 * 99.98012 * 10 9 7 12 12 C 1.38511 * 120.07577 * 179.97438 * 11 10 9 13 13 C 1.39261 * 119.87551 * 0.04476 * 12 11 10 14 14 C 1.38588 * 119.84861 * 359.97268 * 13 12 11 15 15 Cl 1.73604 * 120.00007 * 179.97438 * 14 13 12 16 16 C 1.38394 * 119.93588 * 279.99961 * 10 9 7 17 17 F 1.35096 * 119.96037 * 359.97438 * 16 10 9 18 18 O 1.36532 * 108.64022 * 179.97438 * 13 12 11 19 19 C 1.43985 * 105.48724 * 17.29003 * 18 13 12 20 20 O 1.36555 * 131.49840 * 180.02562 * 12 11 10 21 21 H 0.96998 * 120.00310 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47535 * 60.00498 * 9 7 2 23 23 H 1.08995 * 109.47504 * 299.99755 * 9 7 2 24 24 H 1.07995 * 119.96135 * 0.04264 * 11 10 9 25 25 H 1.09005 * 110.56890 * 214.29954 * 19 18 13 26 26 H 1.09004 * 110.56847 * 91.43250 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.5208 -4.3041 1.1797 12 6 3.4200 -5.3577 1.1829 13 6 4.0318 -5.7511 -0.0046 14 6 3.7379 -5.0871 -1.1849 15 17 4.4988 -5.5738 -2.6675 16 6 2.8373 -4.0343 -1.1816 17 9 2.5508 -3.3877 -2.3327 18 8 4.8660 -6.7989 0.2606 19 6 4.4510 -7.3058 1.5428 20 8 3.8708 -6.1593 2.1923 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.0452 -3.9981 2.0997 25 1 5.3095 -7.6716 2.1061 26 1 3.7078 -8.0937 1.4208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892343.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:43 Heat of formation + Delta-G solvation = -109.182695 kcal Electronic energy + Delta-G solvation = -16725.611565 eV Core-core repulsion = 13517.118944 eV Total energy + Delta-G solvation = -3208.492621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.92949 -43.26756 -39.17797 -37.86901 -37.23406 -35.29056 -32.78080 -31.06082 -29.02411 -26.71885 -25.39598 -24.19317 -22.93222 -19.63399 -18.94956 -18.80672 -18.41442 -17.79681 -16.77811 -16.55525 -16.42653 -16.29488 -15.71801 -15.19128 -14.46818 -14.27348 -14.17156 -14.02545 -13.92190 -13.40062 -12.98091 -12.80479 -12.55258 -12.50858 -12.20873 -11.88394 -11.71662 -11.18112 -10.59395 -9.81661 -9.09352 -8.20447 -6.32855 -0.26818 -0.17061 0.76477 1.42784 1.44820 1.51895 1.52621 2.14566 2.29906 2.44328 3.12095 3.19298 3.35568 3.69420 3.85949 3.88722 4.13124 4.29749 4.52284 4.56189 4.88809 4.95459 5.19070 5.33924 5.55361 5.71441 5.88063 6.10798 6.76397 7.35369 8.88848 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.006756 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.130855 B = 4143.766523 C = 4793.650913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.063 3.937 10 C -0.063 4.063 11 C -0.071 4.071 12 C 0.044 3.956 13 C 0.048 3.952 14 C -0.062 4.062 15 Cl -0.035 7.035 16 C 0.100 3.900 17 F -0.125 7.125 18 O -0.305 6.305 19 C 0.202 3.798 20 O -0.308 6.308 21 H 0.267 0.733 22 H 0.014 0.986 23 H 0.031 0.969 24 H 0.161 0.839 25 H 0.173 0.827 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 -14.289 2.230 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.065 4.065 11 C -0.089 4.089 12 C -0.001 4.001 13 C 0.002 3.998 14 C -0.090 4.090 15 Cl -0.006 7.006 16 C 0.080 3.920 17 F -0.104 7.104 18 O -0.221 6.221 19 C 0.093 3.907 20 O -0.224 6.224 21 H 0.076 0.924 22 H 0.033 0.967 23 H 0.049 0.951 24 H 0.178 0.822 25 H 0.190 0.810 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.161 -14.298 2.175 16.606 hybrid contribution 0.209 0.898 -0.497 1.048 sum 8.370 -13.400 1.678 15.888 Atomic orbital electron populations 1.70032 1.07434 1.28140 1.50731 1.25780 0.95709 1.02717 0.94393 0.85577 0.78426 0.78477 0.79101 1.19775 1.20497 1.19024 1.21246 0.93045 0.90963 1.51767 0.92767 1.18051 0.92301 0.89284 0.97746 1.20204 0.98758 0.97022 0.90477 1.19978 0.96378 0.93580 0.99000 1.19508 0.98268 0.96999 0.85326 1.18778 0.94734 0.93848 0.92432 1.19560 1.01993 1.00032 0.87450 1.98353 1.80002 1.90678 1.31567 1.16824 0.98889 0.93151 0.83152 1.91504 1.92056 1.79985 1.46823 1.87383 1.51634 1.43944 1.39161 1.26337 1.00341 0.87177 0.76889 1.87381 1.73861 1.32479 1.28709 0.92414 0.96747 0.95093 0.82180 0.80989 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 13.29 21.45 0.28 -53.56 15 2 C 0.01 0.73 5.46 84.66 0.46 1.19 15 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.53 -29.37 9.09 25.60 0.23 -29.14 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.06 3.18 4.82 29.10 0.14 3.32 15 10 C -0.06 -2.64 5.08 -19.81 -0.10 -2.74 15 11 C -0.07 -2.49 9.68 22.35 0.22 -2.27 15 12 C 0.04 1.38 7.15 22.58 0.16 1.54 15 13 C 0.05 1.52 6.93 22.60 0.16 1.67 15 14 C -0.06 -2.18 6.33 22.43 0.14 -2.03 15 15 Cl -0.03 -1.10 28.61 -2.72 -0.08 -1.18 15 16 C 0.10 4.07 7.20 22.38 0.16 4.23 15 17 F -0.13 -5.54 16.21 44.97 0.73 -4.81 15 18 O -0.30 -7.91 11.40 -76.43 -0.87 -8.78 15 19 C 0.20 3.50 8.89 113.37 1.01 4.51 15 20 O -0.31 -7.87 11.40 -76.69 -0.87 -8.75 15 21 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 22 H 0.01 0.79 7.94 -2.39 -0.02 0.77 15 23 H 0.03 1.58 8.00 -2.39 -0.02 1.56 15 24 H 0.16 5.15 8.03 -2.91 -0.02 5.13 15 25 H 0.17 1.54 8.14 -2.38 -0.02 1.52 15 26 H 0.11 1.36 8.14 -2.39 -0.02 1.34 15 Total: -1.00 -63.02 258.72 5.02 -58.00 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: 1.23 Total: -6.76 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 2.58 Total: -19.71 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.28 Total: -53.56 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.75 Total: -17.53 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.73 Total: -4.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -63.02 5.02 -58.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892343.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.183 kcal (2) G-P(sol) polarization free energy of solvation -63.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds