Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35014 * 126.13043 * 2 1 4 4 H 0.97001 * 126.04032 * 359.96093 * 3 2 1 5 5 N 1.40085 * 107.92408 * 179.97438 * 3 2 1 6 6 C 1.30842 * 108.22150 * 359.97438 * 5 3 2 7 7 C 1.50699 * 125.89463 * 180.02562 * 6 5 3 8 8 H 1.09001 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47265 * 59.98183 * 7 6 5 10 10 C 1.50700 * 109.47430 * 299.97946 * 7 6 5 11 11 H 1.08004 * 119.99872 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00226 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99658 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 119.99845 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47402 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46932 * 120.00283 * 14 12 10 17 17 H 1.48504 * 109.46806 * 239.99922 * 14 12 10 18 18 C 1.35358 * 126.13242 * 179.68947 * 2 1 3 19 19 Br 1.89100 * 126.04753 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 90.02407 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02508 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02489 * 1 2 3 23 23 H 1.08997 * 109.47018 * 59.99620 * 9 7 6 24 24 H 1.09000 * 109.47171 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.46422 * 299.99967 * 9 7 6 26 26 H 0.97002 * 119.99438 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3031 1.0905 0.0000 4 1 2.0061 2.0139 -0.0005 5 7 3.6338 0.6528 0.0006 6 6 3.6342 -0.6556 0.0015 7 6 4.8552 -1.5388 0.0029 8 1 4.5473 -2.5845 0.0039 9 6 5.6906 -1.2522 1.2523 10 6 5.6792 -1.2589 -1.2274 11 1 5.3517 -0.5154 -1.9390 12 6 6.8518 -1.9512 -1.4441 13 7 7.2509 -2.8562 -0.5773 14 14 7.8734 -1.6036 -2.9688 15 1 7.2112 -0.5499 -3.7789 16 1 9.2253 -1.1411 -2.5640 17 1 7.9958 -2.8441 -3.7760 18 6 2.3052 -1.0932 0.0059 19 35 1.7265 -2.8935 0.0164 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8898 0.5142 23 1 5.0946 -1.4547 2.1422 24 1 6.5740 -1.8907 1.2531 25 1 5.9985 -0.2066 1.2514 26 1 8.0756 -3.3434 -0.7300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930305.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = 59.031418 kcal Electronic energy + Delta-G solvation = -12121.398583 eV Core-core repulsion = 9861.525644 eV Total energy + Delta-G solvation = -2259.872939 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.71380 -34.57385 -32.20087 -31.72249 -29.89104 -28.53004 -26.27858 -25.05611 -22.46927 -19.76197 -18.60082 -16.98770 -16.01835 -14.66115 -14.59121 -13.60380 -13.06909 -12.90480 -12.68849 -12.37258 -12.20367 -11.36614 -10.88663 -10.81347 -10.51996 -10.46474 -10.23981 -9.92019 -9.83147 -9.31488 -9.03863 -8.41446 -8.29382 -7.86323 -5.93987 -3.98569 2.20537 2.32635 3.34460 3.36361 3.43190 3.47115 3.50124 4.50771 4.88389 5.14672 5.37480 5.48246 5.53495 5.85322 6.10092 6.24859 6.92821 6.99857 7.21755 7.35616 7.62624 7.74614 7.95221 8.14454 8.33054 8.49726 9.01710 9.64249 11.12456 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.008687 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.450053 B = 3222.319261 C = 3673.266014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 N -0.486 5.486 4 H 0.433 0.567 5 N -0.285 5.285 6 C 0.156 3.844 7 C 0.106 3.894 8 H 0.057 0.943 9 C -0.130 4.130 10 C -0.499 4.499 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.237 4.237 19 Br -0.032 7.032 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.008 0.992 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 2.539 2.274 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 N -0.192 5.192 4 H 0.276 0.724 5 N -0.106 5.106 6 C -0.012 4.012 7 C 0.085 3.915 8 H 0.075 0.925 9 C -0.188 4.188 10 C -0.538 4.538 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.722 3.278 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.329 4.329 19 Br 0.050 6.950 20 H 0.100 0.900 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.027 0.973 24 H 0.108 0.892 25 H 0.051 0.949 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.413 2.828 2.306 13.901 hybrid contribution 0.026 0.420 -0.868 0.964 sum -13.387 3.248 1.439 13.851 Atomic orbital electron populations 1.20486 0.87357 1.03839 1.03464 1.20718 0.94089 0.87480 1.00686 1.46340 1.05146 1.07289 1.60464 0.72356 1.77596 0.93546 1.12803 1.26608 1.23301 0.95170 0.91173 0.91578 1.17604 0.85690 0.92564 0.95626 0.92546 1.21741 1.01607 1.00787 0.94689 1.21017 1.06022 1.21295 1.05419 0.92517 1.24899 0.97372 0.94993 0.96599 1.69890 1.23121 1.24691 1.35196 0.86494 0.80075 0.78063 0.83144 1.19890 1.21028 1.21009 1.21562 0.95081 0.90655 1.25565 1.96449 1.88956 1.11164 1.98391 0.90046 0.91135 0.89444 0.97322 0.89238 0.94918 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.22 36.01 0.37 -0.63 15 2 C 0.10 1.66 7.21 -82.22 -0.59 1.06 15 3 N -0.49 -8.10 7.36 33.50 0.25 -7.86 15 4 H 0.43 5.31 8.96 -182.61 -1.64 3.68 15 5 N -0.28 -6.32 12.70 33.68 0.43 -5.89 15 6 C 0.16 3.66 5.66 -82.38 -0.47 3.19 15 7 C 0.11 2.76 2.70 -92.92 -0.25 2.51 15 8 H 0.06 1.54 7.29 -51.93 -0.38 1.17 15 9 C -0.13 -3.31 8.95 37.16 0.33 -2.97 15 10 C -0.50 -14.19 8.55 -34.44 -0.29 -14.48 15 11 H 0.06 1.66 7.74 -52.48 -0.41 1.25 15 12 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 13 N -0.89 -25.55 11.32 55.43 0.63 -24.92 15 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 15 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 18 C -0.24 -4.71 6.52 -39.98 -0.26 -4.97 15 19 Br -0.03 -0.57 32.61 -68.01 -2.22 -2.79 15 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.09 0.91 7.75 -51.93 -0.40 0.51 15 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 24 H 0.09 2.43 6.07 -51.93 -0.32 2.12 15 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -31.17 248.66 -7.41 -38.58 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.96 Total: -3.07 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.26 Total: -14.63 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.30 Total: -38.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.22 Total: -2.79 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.17 -7.41 -38.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930305.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.614 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds