Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35014 * 126.13043 * 2 1 4 4 H 0.97001 * 126.04032 * 359.96093 * 3 2 1 5 5 N 1.40085 * 107.92408 * 179.97438 * 3 2 1 6 6 C 1.30842 * 108.22150 * 359.97438 * 5 3 2 7 7 C 1.50699 * 125.89463 * 180.02562 * 6 5 3 8 8 H 1.09001 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47265 * 59.98183 * 7 6 5 10 10 C 1.50700 * 109.47430 * 299.97946 * 7 6 5 11 11 H 1.08004 * 119.99872 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00226 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99658 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 119.99845 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47402 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46932 * 120.00283 * 14 12 10 17 17 H 1.48504 * 109.46806 * 239.99922 * 14 12 10 18 18 C 1.35358 * 126.13242 * 179.68947 * 2 1 3 19 19 Br 1.89100 * 126.04753 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 90.02407 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.02508 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.02489 * 1 2 3 23 23 H 1.08997 * 109.47018 * 59.99620 * 9 7 6 24 24 H 1.09000 * 109.47171 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.46422 * 299.99967 * 9 7 6 26 26 H 0.97002 * 119.99438 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3031 1.0905 0.0000 4 1 2.0061 2.0139 -0.0005 5 7 3.6338 0.6528 0.0006 6 6 3.6342 -0.6556 0.0015 7 6 4.8552 -1.5388 0.0029 8 1 4.5473 -2.5845 0.0039 9 6 5.6906 -1.2522 1.2523 10 6 5.6792 -1.2589 -1.2274 11 1 5.3517 -0.5154 -1.9390 12 6 6.8518 -1.9512 -1.4441 13 7 7.2509 -2.8562 -0.5773 14 14 7.8734 -1.6036 -2.9688 15 1 7.2112 -0.5499 -3.7789 16 1 9.2253 -1.1411 -2.5640 17 1 7.9958 -2.8441 -3.7760 18 6 2.3052 -1.0932 0.0059 19 35 1.7265 -2.8935 0.0164 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8898 0.5142 23 1 5.0946 -1.4547 2.1422 24 1 6.5740 -1.8907 1.2531 25 1 5.9985 -0.2066 1.2514 26 1 8.0756 -3.3434 -0.7300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930305.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = 38.646766 kcal Electronic energy + Delta-G solvation = -12122.282528 eV Core-core repulsion = 9861.525644 eV Total energy + Delta-G solvation = -2260.756884 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.19032 -36.51134 -33.80220 -33.25857 -31.53334 -30.06851 -27.53292 -27.21328 -24.32739 -21.18338 -20.37080 -18.46624 -18.02754 -16.62624 -16.01462 -15.01322 -14.82390 -14.54332 -14.12965 -13.70371 -13.40356 -13.15919 -12.85095 -12.76032 -12.32881 -12.21696 -11.92523 -11.78464 -11.61429 -11.03121 -10.82806 -10.43634 -10.06254 -9.29547 -8.08153 -6.20180 0.85213 0.92709 1.41656 1.42503 1.54126 1.72428 2.14266 2.46761 3.19906 3.73230 4.03513 4.18879 4.52744 4.72207 4.85543 4.96930 5.05947 5.11477 5.19801 5.50178 5.59894 5.84150 6.02881 6.30117 6.49703 6.80542 6.85116 7.45650 8.97516 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.008687 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.450053 B = 3222.319261 C = 3673.266014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 N -0.467 5.467 4 H 0.453 0.547 5 N -0.322 5.322 6 C 0.129 3.871 7 C 0.106 3.894 8 H 0.037 0.963 9 C -0.117 4.117 10 C -0.517 4.517 11 H 0.040 0.960 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.274 4.274 19 Br -0.022 7.022 20 H 0.101 0.899 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.023 0.977 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.713 3.417 1.856 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.001 4.001 3 N -0.176 5.176 4 H 0.301 0.699 5 N -0.144 5.144 6 C -0.039 4.039 7 C 0.085 3.915 8 H 0.055 0.945 9 C -0.176 4.176 10 C -0.556 4.556 11 H 0.059 0.941 12 C -0.180 4.180 13 N -0.552 5.552 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.201 1.201 18 C -0.365 4.365 19 Br 0.061 6.939 20 H 0.120 0.880 21 H 0.124 0.876 22 H 0.112 0.888 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.053 3.724 1.894 15.622 hybrid contribution 0.440 0.189 -0.713 0.859 sum -14.613 3.913 1.181 15.174 Atomic orbital electron populations 1.20736 0.82914 1.05939 1.05349 1.21450 0.96292 0.85766 0.96559 1.46287 1.03588 1.08716 1.59058 0.69903 1.77427 0.96732 1.12527 1.27712 1.22884 0.95633 0.91645 0.93768 1.17349 0.86972 0.92316 0.94815 0.94509 1.21561 1.00946 0.99568 0.95475 1.21182 1.06966 1.21194 1.06233 0.94144 1.25617 0.98290 0.94762 0.99330 1.69989 1.23526 1.25139 1.36501 0.85552 0.78558 0.78023 0.79786 1.20052 1.20277 1.20075 1.21750 0.94358 0.92459 1.27963 1.96420 1.88435 1.10555 1.98489 0.88010 0.87588 0.88813 0.95830 0.91329 0.95722 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 10.22 71.24 0.73 -0.83 15 2 C 0.13 3.95 7.21 41.41 0.30 4.25 15 3 N -0.47 -14.55 7.36 -47.94 -0.35 -14.90 15 4 H 0.45 9.77 8.96 -213.33 -1.91 7.85 15 5 N -0.32 -14.18 12.70 -47.35 -0.60 -14.78 15 6 C 0.13 6.04 5.66 43.11 0.24 6.28 15 7 C 0.11 5.68 2.70 -12.28 -0.03 5.64 15 8 H 0.04 2.08 7.29 -2.39 -0.02 2.06 15 9 C -0.12 -6.11 8.95 71.98 0.64 -5.47 15 10 C -0.52 -30.07 8.55 25.60 0.22 -29.85 15 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 12 C 0.02 1.08 5.30 84.66 0.45 1.53 15 13 N -0.91 -53.13 11.32 21.45 0.24 -52.89 15 14 Si 0.96 45.12 29.54 68.60 2.03 47.15 15 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 18 C -0.27 -10.62 6.52 22.01 0.14 -10.48 15 19 Br -0.02 -0.75 32.61 -20.37 -0.66 -1.41 15 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.11 1.13 8.14 -2.39 -0.02 1.12 15 22 H 0.09 1.58 7.75 -2.38 -0.02 1.56 15 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 24 H 0.07 3.83 6.07 -2.39 -0.01 3.82 15 25 H 0.02 1.26 8.14 -2.39 -0.02 1.24 15 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 Total: -1.00 -68.24 248.66 2.63 -65.60 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -0.71 Total: 0.15 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 2.69 Total: -28.93 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -0.71 Total: -82.57 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -0.66 Total: -1.41 kcal Total: -68.24 2.63 -65.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930305.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.251 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds