Wall clock time and date at job start Mon Mar 30 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48489 * 109.47262 * 269.99952 * 3 2 1 5 5 H 1.48509 * 109.46916 * 30.00003 * 3 2 1 6 6 H 1.48493 * 109.47108 * 149.99489 * 3 2 1 7 7 C 1.37869 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00223 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00614 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47153 * 54.99889 * 10 9 7 12 12 N 1.46896 * 109.46848 * 294.99917 * 10 9 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 10 9 7 14 14 C 1.34834 * 126.28081 * 79.68853 * 13 10 9 15 15 N 1.36451 * 108.22069 * 179.89748 * 14 13 10 16 16 H 0.97004 * 125.63260 * 180.14058 * 15 14 13 17 17 C 1.36348 * 108.72033 * 0.37071 * 15 14 13 18 18 Br 1.89102 * 125.89852 * 179.79397 * 17 15 14 19 19 C 1.34945 * 108.20313 * 359.77573 * 17 15 14 20 20 H 0.96997 * 120.00333 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46692 * 59.99825 * 9 7 2 22 22 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 23 23 H 1.00900 * 111.00550 * 299.99950 * 12 10 9 24 24 H 1.00896 * 111.00310 * 63.95536 * 12 10 9 25 25 H 1.07996 * 125.88864 * 0.04308 * 14 13 10 26 26 H 1.08007 * 126.28855 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1754 -0.8411 12 7 3.6325 -3.2935 1.2559 13 6 5.5235 -2.6383 -0.1223 14 6 6.4060 -2.4139 0.8722 15 7 7.6650 -2.5053 0.3541 16 1 8.4902 -2.3896 0.8507 17 6 7.5711 -2.7812 -0.9779 18 35 9.0228 -3.0036 -2.1691 19 6 6.2634 -2.8686 -1.2991 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8752 -0.6804 -0.8889 23 1 4.0230 -2.8124 2.0522 24 1 2.6288 -3.3627 1.3318 25 1 6.1589 -2.2010 1.9017 26 1 5.8583 -3.0773 -2.2784 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020219.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:31 Heat of formation + Delta-G solvation = 16.370273 kcal Electronic energy + Delta-G solvation = -11854.087408 eV Core-core repulsion = 9592.364542 eV Total energy + Delta-G solvation = -2261.722865 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08773 -37.25020 -34.48340 -32.59068 -31.73960 -30.38857 -28.74244 -25.96605 -22.85385 -21.50562 -19.94278 -19.43798 -18.53545 -16.46287 -16.05816 -15.40583 -15.22934 -14.91589 -14.70446 -14.18485 -13.90671 -13.51405 -13.24559 -12.73492 -12.34117 -12.10350 -11.85466 -11.72893 -11.44539 -11.22536 -10.77316 -9.80575 -9.33089 -8.94802 -8.28021 -6.31093 0.34963 1.08396 1.35110 1.36129 1.47378 1.91420 2.35769 2.50704 3.07431 4.05139 4.27911 4.30914 4.45816 4.72677 4.88309 4.97278 5.18669 5.27041 5.48886 5.63878 5.87114 5.95239 6.26396 6.49326 6.58320 6.76937 6.81881 7.33964 8.87916 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.039188 B = 0.005357 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.337185 B = 5225.887533 C = 5541.419043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.523 4.523 8 H 0.042 0.958 9 C -0.028 4.028 10 C 0.178 3.822 11 H 0.056 0.944 12 N -0.830 5.830 13 C -0.164 4.164 14 C 0.027 3.973 15 N -0.533 5.533 16 H 0.432 0.568 17 C -0.006 4.006 18 Br 0.010 6.990 19 C -0.162 4.162 20 H 0.265 0.735 21 H 0.020 0.980 22 H 0.008 0.992 23 H 0.336 0.664 24 H 0.341 0.659 25 H 0.192 0.808 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.079 -4.612 -0.473 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.561 4.561 8 H 0.060 0.940 9 C -0.068 4.068 10 C 0.066 3.934 11 H 0.075 0.925 12 N -0.358 5.358 13 C -0.171 4.171 14 C -0.107 4.107 15 N -0.131 5.131 16 H 0.272 0.728 17 C -0.196 4.196 18 Br 0.093 6.907 19 C -0.191 4.191 20 H 0.074 0.926 21 H 0.039 0.961 22 H 0.026 0.974 23 H 0.148 0.852 24 H 0.154 0.846 25 H 0.209 0.791 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.028 -5.220 -1.108 23.638 hybrid contribution -0.819 1.790 0.435 2.016 sum 22.209 -3.430 -0.673 22.482 Atomic orbital electron populations 1.70056 1.08101 1.27952 1.52765 1.25895 0.95446 1.03106 0.94378 0.85730 0.79446 0.79007 0.78815 1.19932 1.21150 1.17339 1.21411 0.91592 0.93219 1.49903 0.93984 1.20226 0.94192 0.95946 0.96388 1.19381 0.88833 0.92379 0.92834 0.92540 1.59168 1.16654 1.56374 1.03563 1.19557 0.94727 1.08876 0.93915 1.21956 0.82150 1.06601 0.99947 1.41831 1.08836 1.55988 1.06482 0.72799 1.21814 0.93759 1.17744 0.86272 1.96688 1.40038 1.96847 1.57091 1.20867 0.90879 1.07806 0.99546 0.92631 0.96124 0.97351 0.85165 0.84638 0.79148 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.68 13.96 21.44 0.30 -58.38 15 2 C 0.01 0.51 5.47 84.65 0.46 0.97 15 3 Si 0.95 44.37 27.47 68.60 1.88 46.25 15 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 15 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 15 7 C -0.52 -29.11 9.10 25.60 0.23 -28.88 15 8 H 0.04 2.54 7.39 -2.91 -0.02 2.52 15 9 C -0.03 -1.30 3.67 29.85 0.11 -1.19 15 10 C 0.18 7.04 3.22 44.17 0.14 7.18 15 11 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 12 N -0.83 -29.84 9.09 -171.81 -1.56 -31.40 15 13 C -0.16 -5.48 5.14 -19.99 -0.10 -5.59 15 14 C 0.03 0.73 11.31 83.19 0.94 1.67 15 15 N -0.53 -11.89 6.08 -189.54 -1.15 -13.05 15 16 H 0.43 6.48 8.96 -92.71 -0.83 5.65 15 17 C -0.01 -0.15 7.65 83.23 0.64 0.49 15 18 Br 0.01 0.22 34.09 -20.37 -0.69 -0.48 15 19 C -0.16 -5.13 10.77 22.17 0.24 -4.89 15 20 H 0.26 15.39 8.31 -92.71 -0.77 14.62 15 21 H 0.02 0.92 7.20 -2.39 -0.02 0.90 15 22 H 0.01 0.39 7.57 -2.38 -0.02 0.37 15 23 H 0.34 10.67 8.16 -89.69 -0.73 9.93 15 24 H 0.34 13.40 7.90 -89.70 -0.71 12.69 15 25 H 0.19 4.08 7.60 -2.91 -0.02 4.06 15 26 H 0.14 4.32 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -64.81 247.07 0.34 -64.47 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -1.10 Total: 22.82 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 2.66 Total: -30.24 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -2.42 Total: -102.82 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.48 kcal Total: -64.81 0.34 -64.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020219.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.841 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds