Wall clock time and date at job start Mon Mar 30 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47203 * 2 1 4 4 C 1.50708 * 109.47314 * 120.00082 * 2 1 3 5 5 H 1.07994 * 119.99585 * 355.54871 * 4 2 1 6 6 C 1.37881 * 120.00052 * 175.55840 * 4 2 1 7 7 N 1.31512 * 119.99730 * 185.12506 * 6 4 2 8 8 Si 1.86793 * 119.99924 * 5.11919 * 6 4 2 9 9 H 1.48499 * 109.47172 * 83.96174 * 8 6 4 10 10 H 1.48497 * 109.47220 * 203.96081 * 8 6 4 11 11 H 1.48495 * 109.47643 * 323.96046 * 8 6 4 12 12 N 1.46502 * 109.47343 * 239.99936 * 2 1 3 13 13 C 1.35011 * 126.03722 * 72.08903 * 12 2 1 14 14 C 1.35353 * 107.73518 * 179.97438 * 13 12 2 15 15 Br 1.89103 * 126.04677 * 179.97438 * 14 13 12 16 16 C 1.39917 * 107.91046 * 0.02562 * 14 13 12 17 17 N 1.30851 * 108.20538 * 359.75573 * 16 14 13 18 18 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 19 19 H 1.08991 * 109.47233 * 59.99567 * 1 2 3 20 20 H 1.09010 * 109.46801 * 300.00218 * 1 2 3 21 21 H 1.08996 * 109.47407 * 63.29595 * 3 2 1 22 22 H 1.09004 * 109.47066 * 183.29497 * 3 2 1 23 23 H 1.08998 * 109.46784 * 303.29335 * 3 2 1 24 24 H 0.96996 * 119.99974 * 180.02562 * 7 6 4 25 25 H 1.08004 * 126.12891 * 359.94808 * 13 12 2 26 26 H 1.08002 * 125.89746 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.3332 -1.0575 1.9768 6 6 3.3846 -0.9171 1.4035 7 7 3.8164 -1.6241 2.4248 8 14 4.6032 -0.1929 0.1870 9 1 4.8935 1.2158 0.5563 10 1 5.8609 -0.9818 0.2171 11 1 4.0240 -0.2370 -1.1797 12 7 2.0184 -0.6906 -1.1962 13 6 1.9666 -0.2214 -2.4610 14 6 2.5188 -1.1554 -3.2702 15 35 2.7111 -1.0282 -5.1472 16 6 2.9211 -2.2322 -2.4726 17 7 2.6260 -1.9523 -1.2289 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 0.5139 0.8901 21 1 1.7258 1.9391 0.9180 22 1 3.1285 1.4431 -0.0591 23 1 1.6293 1.9731 -0.8590 24 1 4.7676 -1.7692 2.5468 25 1 1.5575 0.7288 -2.7715 26 1 3.3973 -3.1362 -2.8224 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029588.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:42 Heat of formation + Delta-G solvation = 96.586582 kcal Electronic energy + Delta-G solvation = -12723.743801 eV Core-core repulsion = 10465.499376 eV Total energy + Delta-G solvation = -2258.244425 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.67616 -35.75946 -32.14907 -31.14992 -29.61734 -27.86483 -26.82945 -25.23907 -21.88569 -19.93054 -19.14476 -17.38393 -15.56770 -15.34456 -14.26316 -13.72709 -13.06488 -13.01306 -12.81298 -12.41828 -12.22596 -11.63197 -11.48641 -11.05497 -10.60641 -10.39422 -10.35628 -10.07961 -9.68146 -9.44712 -9.31112 -8.70619 -8.62260 -7.62018 -6.30227 -4.38227 2.24294 2.59763 3.08654 3.34029 3.38334 3.42414 3.58595 4.31897 5.05849 5.32163 5.53580 5.69459 5.87179 6.01061 6.06182 6.13722 6.26301 6.36735 6.44423 6.65912 6.91668 7.05458 7.36900 7.91124 8.15647 8.56612 8.71063 9.31595 10.79392 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.035457 B = 0.009007 C = 0.008193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.495959 B = 3107.881119 C = 3416.625675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.254 3.746 3 C -0.155 4.155 4 C -0.514 4.514 5 H 0.086 0.914 6 C 0.105 3.895 7 N -0.871 5.871 8 Si 0.886 3.114 9 H -0.291 1.291 10 H -0.298 1.298 11 H -0.245 1.245 12 N -0.315 5.315 13 C 0.072 3.928 14 C -0.254 4.254 15 Br -0.060 7.060 16 C 0.036 3.964 17 N -0.241 5.241 18 H 0.056 0.944 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.269 0.731 25 H 0.165 0.835 26 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 3.820 -12.840 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.176 3.824 3 C -0.213 4.213 4 C -0.552 4.552 5 H 0.104 0.896 6 C -0.103 4.103 7 N -0.505 5.505 8 Si 0.717 3.283 9 H -0.220 1.220 10 H -0.226 1.226 11 H -0.169 1.169 12 N -0.097 5.097 13 C -0.081 4.081 14 C -0.346 4.346 15 Br 0.022 6.978 16 C -0.151 4.151 17 N -0.062 5.062 18 H 0.075 0.925 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.097 0.903 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.183 0.817 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.844 3.429 -12.008 12.808 hybrid contribution 0.811 0.573 -1.088 1.473 sum -2.033 4.002 -13.096 13.844 Atomic orbital electron populations 1.22001 0.94798 1.01869 1.00667 1.19163 0.91838 0.89347 0.82036 1.22444 1.01149 0.96286 1.01429 1.20690 0.93323 1.38972 1.02168 0.89582 1.24938 0.98398 0.92678 0.94289 1.69877 1.15484 1.35952 1.29166 0.87161 0.80186 0.77042 0.83920 1.22002 1.22609 1.16910 1.51097 1.40487 1.12385 1.05696 1.22282 1.00366 0.99057 0.86386 1.21658 1.21539 1.01385 0.90014 1.96415 1.97847 1.98717 1.04791 1.23705 1.02097 0.98904 0.90423 1.77637 1.13334 0.97491 1.17690 0.92461 0.94261 0.91195 0.90328 0.93038 0.94221 0.92111 0.81734 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.62 37.16 0.32 -2.15 15 2 C 0.25 5.49 0.81 -132.96 -0.11 5.38 15 3 C -0.15 -2.99 7.82 37.16 0.29 -2.70 15 4 C -0.51 -13.58 8.32 -34.43 -0.29 -13.86 15 5 H 0.09 2.46 7.99 -52.49 -0.42 2.04 15 6 C 0.11 2.93 5.03 -17.82 -0.09 2.84 15 7 N -0.87 -25.85 13.96 55.43 0.77 -25.07 15 8 Si 0.89 22.25 22.54 -169.99 -3.83 18.42 15 9 H -0.29 -7.14 6.78 56.52 0.38 -6.75 15 10 H -0.30 -7.81 7.11 56.52 0.40 -7.40 15 11 H -0.25 -5.93 3.66 56.52 0.21 -5.72 15 12 N -0.31 -6.85 1.71 -49.70 -0.09 -6.94 15 13 C 0.07 1.36 9.70 -17.18 -0.17 1.19 15 14 C -0.25 -4.72 6.41 -39.98 -0.26 -4.97 15 15 Br -0.06 -0.91 34.08 -68.01 -2.32 -3.23 15 16 C 0.04 0.72 11.61 -17.34 -0.20 0.52 15 17 N -0.24 -5.67 8.89 30.64 0.27 -5.40 15 18 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.07 1.18 8.14 -51.92 -0.42 0.76 15 21 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 22 H 0.05 1.09 3.48 -51.93 -0.18 0.91 15 23 H 0.04 0.63 7.62 -51.93 -0.40 0.23 15 24 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 25 H 0.17 2.58 7.74 -52.48 -0.41 2.17 15 26 H 0.17 2.98 8.06 -52.49 -0.42 2.55 15 LS Contribution 232.81 15.07 3.51 3.51 Total: -1.00 -29.52 232.81 -5.04 -34.56 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -2.86 Total: -2.10 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.50 Total: -13.76 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.96 Total: -37.41 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -3.83 Total: 18.42 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.32 Total: -3.23 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.52 -5.04 -34.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029588.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.151 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds