Wall clock time and date at job start Mon Mar 30 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47203 * 2 1 4 4 C 1.50708 * 109.47314 * 120.00082 * 2 1 3 5 5 H 1.07994 * 119.99585 * 355.54871 * 4 2 1 6 6 C 1.37881 * 120.00052 * 175.55840 * 4 2 1 7 7 N 1.31512 * 119.99730 * 185.12506 * 6 4 2 8 8 Si 1.86793 * 119.99924 * 5.11919 * 6 4 2 9 9 H 1.48499 * 109.47172 * 83.96174 * 8 6 4 10 10 H 1.48497 * 109.47220 * 203.96081 * 8 6 4 11 11 H 1.48495 * 109.47643 * 323.96046 * 8 6 4 12 12 N 1.46502 * 109.47343 * 239.99936 * 2 1 3 13 13 C 1.35011 * 126.03722 * 72.08903 * 12 2 1 14 14 C 1.35353 * 107.73518 * 179.97438 * 13 12 2 15 15 Br 1.89103 * 126.04677 * 179.97438 * 14 13 12 16 16 C 1.39917 * 107.91046 * 0.02562 * 14 13 12 17 17 N 1.30851 * 108.20538 * 359.75573 * 16 14 13 18 18 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 19 19 H 1.08991 * 109.47233 * 59.99567 * 1 2 3 20 20 H 1.09010 * 109.46801 * 300.00218 * 1 2 3 21 21 H 1.08996 * 109.47407 * 63.29595 * 3 2 1 22 22 H 1.09004 * 109.47066 * 183.29497 * 3 2 1 23 23 H 1.08998 * 109.46784 * 303.29335 * 3 2 1 24 24 H 0.96996 * 119.99974 * 180.02562 * 7 6 4 25 25 H 1.08004 * 126.12891 * 359.94808 * 13 12 2 26 26 H 1.08002 * 125.89746 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 1.3332 -1.0575 1.9768 6 6 3.3846 -0.9171 1.4035 7 7 3.8164 -1.6241 2.4248 8 14 4.6032 -0.1929 0.1870 9 1 4.8935 1.2158 0.5563 10 1 5.8609 -0.9818 0.2171 11 1 4.0240 -0.2370 -1.1797 12 7 2.0184 -0.6906 -1.1962 13 6 1.9666 -0.2214 -2.4610 14 6 2.5188 -1.1554 -3.2702 15 35 2.7111 -1.0282 -5.1472 16 6 2.9211 -2.2322 -2.4726 17 7 2.6260 -1.9523 -1.2289 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 0.5139 0.8901 21 1 1.7258 1.9391 0.9180 22 1 3.1285 1.4431 -0.0591 23 1 1.6293 1.9731 -0.8590 24 1 4.7676 -1.7692 2.5468 25 1 1.5575 0.7288 -2.7715 26 1 3.3973 -3.1362 -2.8224 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029588.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:42 Heat of formation + Delta-G solvation = 77.267468 kcal Electronic energy + Delta-G solvation = -12724.581541 eV Core-core repulsion = 10465.499376 eV Total energy + Delta-G solvation = -2259.082165 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.24637 -37.43097 -34.17212 -32.55275 -31.21749 -29.33143 -28.32566 -27.17199 -23.48651 -21.48762 -20.82058 -19.22026 -17.33171 -17.04374 -16.00748 -15.31026 -14.99826 -14.58221 -14.36909 -14.02694 -13.76995 -13.07920 -13.00593 -12.70553 -12.32011 -12.22593 -11.90588 -11.67821 -11.34497 -11.19221 -10.87130 -10.72497 -10.25219 -9.12468 -8.41406 -6.50416 0.83534 1.05863 1.21577 1.36523 1.37749 1.81697 1.98040 2.29308 3.06975 3.91230 4.00776 4.19181 4.28420 4.50224 4.58484 4.74525 4.79494 4.88633 4.96093 5.22055 5.39263 5.43186 5.64889 6.11043 6.33247 6.59052 6.98783 7.23378 8.72404 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.035457 B = 0.009007 C = 0.008193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.495959 B = 3107.881119 C = 3416.625675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.251 3.749 3 C -0.153 4.153 4 C -0.513 4.513 5 H 0.048 0.952 6 C 0.059 3.941 7 N -0.927 5.927 8 Si 0.939 3.061 9 H -0.282 1.282 10 H -0.322 1.322 11 H -0.227 1.227 12 N -0.330 5.330 13 C 0.080 3.920 14 C -0.261 4.261 15 Br -0.023 7.023 16 C 0.036 3.964 17 N -0.302 5.302 18 H 0.036 0.964 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.031 0.969 23 H 0.084 0.916 24 H 0.265 0.735 25 H 0.204 0.796 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 5.688 -15.765 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.172 3.828 3 C -0.211 4.211 4 C -0.551 4.551 5 H 0.066 0.934 6 C -0.143 4.143 7 N -0.565 5.565 8 Si 0.769 3.231 9 H -0.210 1.210 10 H -0.252 1.252 11 H -0.150 1.150 12 N -0.112 5.112 13 C -0.072 4.072 14 C -0.352 4.352 15 Br 0.059 6.941 16 C -0.151 4.151 17 N -0.123 5.123 18 H 0.055 0.945 19 H 0.094 0.906 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.661 5.316 -14.960 16.293 hybrid contribution 0.948 -0.055 -0.321 1.003 sum -2.712 5.261 -15.281 16.387 Atomic orbital electron populations 1.21951 0.92376 1.01350 1.03041 1.19194 0.93790 0.89771 0.80011 1.22406 0.99868 0.94813 1.04044 1.20917 0.92369 1.38227 1.03577 0.93425 1.25566 1.00162 0.93163 0.95378 1.70012 1.15388 1.39315 1.31746 0.86352 0.77274 0.76246 0.83206 1.21032 1.25180 1.15025 1.50528 1.41629 1.12362 1.06716 1.22853 0.99364 1.00244 0.84759 1.21854 1.20672 1.00586 0.92107 1.96456 1.97756 1.98622 1.01224 1.24161 1.01010 0.99983 0.89915 1.77609 1.15773 0.99016 1.19868 0.94489 0.90568 0.90092 0.89467 0.94988 0.89741 0.92598 0.77889 0.78925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.62 71.98 0.62 -3.77 15 2 C 0.25 10.37 0.81 2.86 0.00 10.37 15 3 C -0.15 -5.36 7.82 71.98 0.56 -4.79 15 4 C -0.51 -27.59 8.32 25.60 0.21 -27.37 15 5 H 0.05 2.85 7.99 -2.91 -0.02 2.82 15 6 C 0.06 3.40 5.03 84.66 0.43 3.82 15 7 N -0.93 -57.61 13.96 21.45 0.30 -57.31 15 8 Si 0.94 46.45 22.54 68.60 1.55 48.00 15 9 H -0.28 -13.27 6.78 99.48 0.67 -12.60 15 10 H -0.32 -16.98 7.11 99.48 0.71 -16.27 15 11 H -0.23 -10.44 3.66 99.48 0.36 -10.08 15 12 N -0.33 -13.59 1.71 -311.14 -0.53 -14.12 15 13 C 0.08 2.67 9.70 83.54 0.81 3.48 15 14 C -0.26 -8.73 6.41 22.01 0.14 -8.59 15 15 Br -0.02 -0.60 34.08 -20.37 -0.69 -1.30 15 16 C 0.04 1.38 11.61 85.25 0.99 2.36 15 17 N -0.30 -13.91 8.89 -56.98 -0.51 -14.42 15 18 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 20 H 0.08 2.55 8.14 -2.38 -0.02 2.53 15 21 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 22 H 0.03 1.25 3.48 -2.38 -0.01 1.24 15 23 H 0.08 2.20 7.62 -2.39 -0.02 2.18 15 24 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 25 H 0.20 5.05 7.74 -2.91 -0.02 5.03 15 26 H 0.19 6.26 8.06 -2.91 -0.02 6.23 15 Total: -1.00 -66.03 232.81 4.68 -61.35 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 0.80 Total: 2.30 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.77 Total: -24.49 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.74 Total: -85.85 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.55 Total: 48.00 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.69 Total: -1.30 kcal Total: -66.03 4.68 -61.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029588.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.621 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds