Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64742 * 305.70309 * 10 9 7 12 12 C 1.54452 * 110.72768 * 182.53912 * 10 9 7 13 13 O 1.43891 * 105.08160 * 219.84938 * 12 10 9 14 14 C 1.43788 * 107.10476 * 358.29390 * 13 12 10 15 15 H 1.08995 * 110.10690 * 265.90765 * 14 13 12 16 16 C 1.50703 * 110.11270 * 144.32653 * 14 13 12 17 17 C 1.34483 * 125.78130 * 61.44821 * 16 14 13 18 18 C 1.41404 * 106.85674 * 180.02562 * 17 16 14 19 19 C 1.34656 * 106.82236 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 125.79810 * 180.02562 * 19 18 17 21 21 O 1.34303 * 108.40260 * 359.73505 * 19 18 17 22 22 O 1.44575 * 106.29107 * 24.95905 * 14 13 12 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.09003 * 110.31859 * 338.75149 * 12 10 9 27 27 H 1.09001 * 110.32085 * 100.84441 * 12 10 9 28 28 H 1.08008 * 126.57577 * 0.02562 * 17 16 14 29 29 H 1.07992 * 126.58915 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9476 -3.5674 -0.8288 12 6 1.5038 -5.0154 -0.0645 13 8 2.2290 -5.8822 0.8261 14 6 3.3359 -5.1251 1.3449 15 1 4.2258 -5.3004 0.7405 16 6 3.5996 -5.5088 2.7782 17 6 3.9480 -6.7327 3.2133 18 6 4.0929 -6.6430 4.6170 19 6 3.8234 -5.3679 4.9560 20 17 3.8567 -4.7160 6.5646 21 8 3.5307 -4.6847 3.8374 22 8 2.9498 -3.7343 1.2629 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 0.4745 -4.8994 0.2749 27 1 1.5244 -5.4107 -1.0801 28 1 4.0899 -7.6150 2.6068 29 1 4.3670 -7.4433 5.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260068509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = -77.708819 kcal Electronic energy + Delta-G solvation = -16874.996853 eV Core-core repulsion = 13791.329347 eV Total energy + Delta-G solvation = -3083.667506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.71588 -39.96336 -37.07668 -34.94156 -33.64063 -33.23583 -31.47969 -29.51063 -26.54191 -24.66715 -23.13843 -22.07756 -21.09117 -20.51512 -17.98095 -17.46418 -16.70506 -16.19042 -16.01897 -15.47734 -15.05823 -13.90440 -13.71396 -13.51454 -13.16308 -12.99060 -12.87713 -12.54272 -12.21821 -12.17332 -11.44141 -11.34443 -11.10338 -10.61926 -10.43492 -10.09124 -10.07363 -9.79352 -9.55612 -8.64215 -8.53969 -8.37829 -6.40139 -4.09314 1.09257 1.40586 2.34194 3.11373 3.44760 3.47873 3.63456 3.83367 4.18633 4.52286 4.76271 4.88160 5.02105 5.15765 5.33165 5.39142 5.41129 5.50599 5.67093 5.68476 5.96096 6.10679 6.18736 6.43740 6.79879 7.00757 7.14327 7.41738 8.08890 8.41985 8.82489 9.60872 11.00656 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.005667 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.196021 B = 4939.636916 C = 5957.231052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.073 2.927 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.053 0.947 9 C 0.014 3.986 10 C 0.061 3.939 11 H 0.079 0.921 12 C 0.021 3.979 13 O -0.382 6.382 14 C 0.302 3.698 15 H 0.107 0.893 16 C 0.011 3.989 17 C -0.181 4.181 18 C -0.180 4.180 19 C 0.026 3.974 20 Cl 0.023 6.977 21 O -0.143 6.143 22 O -0.342 6.342 23 H 0.268 0.732 24 H 0.021 0.979 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -14.013 6.185 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.071 0.929 9 C -0.023 4.023 10 C 0.004 3.996 11 H 0.097 0.903 12 C -0.055 4.055 13 O -0.304 6.304 14 C 0.206 3.794 15 H 0.124 0.876 16 C -0.040 4.040 17 C -0.201 4.201 18 C -0.200 4.200 19 C -0.051 4.051 20 Cl 0.052 6.948 21 O -0.039 6.039 22 O -0.262 6.262 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.179 0.821 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.694 -12.021 6.518 15.690 hybrid contribution 0.240 -1.741 0.168 1.766 sum 7.934 -13.762 6.685 17.235 Atomic orbital electron populations 1.70778 1.06870 1.30495 1.46707 1.25861 0.96496 1.02814 0.93630 0.83479 0.74599 0.74903 0.76875 1.21374 1.20987 1.21430 1.21933 0.94492 0.91331 1.55655 0.92871 1.19335 0.93501 0.92110 0.97352 1.24070 0.94500 0.95736 0.85299 0.90288 1.24279 0.97441 0.90023 0.93782 1.88852 1.41995 1.36941 1.62585 1.22409 0.91563 0.79778 0.85635 0.87605 1.22212 1.04825 0.89369 0.87614 1.21450 1.06583 0.97699 0.94332 1.21482 1.07546 0.95095 0.95856 1.22536 1.09192 0.90258 0.83139 1.98423 1.97108 1.87880 1.11392 1.84098 1.68025 1.38505 1.13267 1.89759 1.74177 1.21880 1.40391 0.92200 0.96039 0.95343 0.89649 0.89750 0.82135 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.65 55.43 0.76 -27.12 15 2 C 0.02 0.45 5.46 -17.82 -0.10 0.36 15 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 15 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 6 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.60 -17.01 9.00 -34.44 -0.31 -17.32 15 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.01 0.35 3.94 -27.88 -0.11 0.24 15 10 C 0.06 1.25 3.33 -25.97 -0.09 1.16 15 11 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 12 C 0.02 0.35 7.66 37.92 0.29 0.64 15 13 O -0.38 -6.51 11.25 -59.26 -0.67 -7.17 15 14 C 0.30 5.17 4.36 36.01 0.16 5.32 15 15 H 0.11 1.48 8.14 -51.93 -0.42 1.06 15 16 C 0.01 0.19 6.77 -35.63 -0.24 -0.05 15 17 C -0.18 -2.41 10.81 -39.70 -0.43 -2.84 15 18 C -0.18 -2.24 10.88 -39.65 -0.43 -2.67 15 19 C 0.03 0.38 7.93 29.46 0.23 0.62 15 20 Cl 0.02 0.29 29.30 -51.86 -1.52 -1.23 15 21 O -0.14 -2.61 10.46 -5.69 -0.06 -2.67 15 22 O -0.34 -7.46 10.98 -64.08 -0.70 -8.16 15 23 H 0.27 8.07 7.22 -40.82 -0.29 7.78 15 24 H 0.02 0.58 8.01 -51.93 -0.42 0.16 15 25 H 0.03 0.71 8.01 -51.93 -0.42 0.29 15 26 H 0.09 1.45 7.85 -51.93 -0.41 1.04 15 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.16 1.68 8.06 -52.48 -0.42 1.25 15 29 H 0.16 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -32.34 276.37 -6.98 -39.33 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -2.85 Total: -3.19 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.02 Total: -14.55 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.76 Total: -27.12 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.43 Total: -18.00 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.34 -6.98 -39.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.383 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds