Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64742 * 305.70309 * 10 9 7 12 12 C 1.54452 * 110.72768 * 182.53912 * 10 9 7 13 13 O 1.43891 * 105.08160 * 219.84938 * 12 10 9 14 14 C 1.43788 * 107.10476 * 358.29390 * 13 12 10 15 15 H 1.08995 * 110.10690 * 265.90765 * 14 13 12 16 16 C 1.50703 * 110.11270 * 144.32653 * 14 13 12 17 17 C 1.34483 * 125.78130 * 61.44821 * 16 14 13 18 18 C 1.41404 * 106.85674 * 180.02562 * 17 16 14 19 19 C 1.34656 * 106.82236 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 125.79810 * 180.02562 * 19 18 17 21 21 O 1.34303 * 108.40260 * 359.73505 * 19 18 17 22 22 O 1.44575 * 106.29107 * 24.95905 * 14 13 12 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.09003 * 110.31859 * 338.75149 * 12 10 9 27 27 H 1.09001 * 110.32085 * 100.84441 * 12 10 9 28 28 H 1.08008 * 126.57577 * 0.02562 * 17 16 14 29 29 H 1.07992 * 126.58915 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9476 -3.5674 -0.8288 12 6 1.5038 -5.0154 -0.0645 13 8 2.2290 -5.8822 0.8261 14 6 3.3359 -5.1251 1.3449 15 1 4.2258 -5.3004 0.7405 16 6 3.5996 -5.5088 2.7782 17 6 3.9480 -6.7327 3.2133 18 6 4.0929 -6.6430 4.6170 19 6 3.8234 -5.3679 4.9560 20 17 3.8567 -4.7160 6.5646 21 8 3.5307 -4.6847 3.8374 22 8 2.9498 -3.7343 1.2629 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 0.4745 -4.8994 0.2749 27 1 1.5244 -5.4107 -1.0801 28 1 4.0899 -7.6150 2.6068 29 1 4.3670 -7.4433 5.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260068509.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = -98.688533 kcal Electronic energy + Delta-G solvation = -16875.906602 eV Core-core repulsion = 13791.329347 eV Total energy + Delta-G solvation = -3084.577255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.85121 -41.38923 -38.09351 -36.51382 -35.58859 -34.36961 -33.07731 -30.93600 -28.26446 -25.99465 -25.04534 -23.31911 -22.55114 -21.75966 -19.33335 -19.03470 -18.37864 -17.48458 -17.39679 -16.92878 -16.37271 -15.68674 -15.17420 -15.04720 -14.52035 -14.42281 -14.03788 -14.00188 -13.71611 -13.31025 -13.24239 -12.95426 -12.50650 -12.45960 -12.18623 -11.92130 -11.22750 -11.14694 -11.03931 -10.73898 -10.60013 -9.64202 -8.72044 -6.41692 0.04888 0.27509 1.32300 1.50592 1.59279 1.77524 1.96474 2.45229 2.54252 2.95000 3.13744 3.50231 3.64476 3.81984 3.87479 3.97745 4.18461 4.38340 4.44588 4.53578 4.64771 4.75676 4.83315 5.02991 5.18330 5.24676 5.69167 5.86807 5.95069 6.13164 6.53050 7.36878 8.69596 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.005667 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.196021 B = 4939.636916 C = 5957.231052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.118 2.882 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.610 4.610 8 H 0.048 0.952 9 C 0.014 3.986 10 C 0.062 3.938 11 H 0.094 0.906 12 C 0.031 3.969 13 O -0.383 6.383 14 C 0.300 3.700 15 H 0.140 0.860 16 C -0.032 4.032 17 C -0.158 4.158 18 C -0.163 4.163 19 C 0.003 3.997 20 Cl 0.034 6.966 21 O -0.185 6.185 22 O -0.383 6.383 23 H 0.257 0.743 24 H -0.010 1.010 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.194 0.806 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -15.592 6.098 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.235 4.235 3 Si 0.940 3.060 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.648 4.648 8 H 0.066 0.934 9 C -0.023 4.023 10 C 0.005 3.995 11 H 0.112 0.888 12 C -0.045 4.045 13 O -0.304 6.304 14 C 0.205 3.795 15 H 0.157 0.843 16 C -0.082 4.082 17 C -0.177 4.177 18 C -0.183 4.183 19 C -0.073 4.073 20 Cl 0.062 6.938 21 O -0.083 6.083 22 O -0.303 6.303 23 H 0.066 0.934 24 H 0.008 0.992 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.211 0.789 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.204 -13.639 6.431 17.666 hybrid contribution -0.218 -1.326 0.280 1.373 sum 8.986 -14.965 6.710 18.701 Atomic orbital electron populations 1.70900 1.07808 1.29907 1.48806 1.27368 0.96626 1.06741 0.92759 0.82918 0.74381 0.71210 0.77523 1.20596 1.20313 1.19142 1.22330 0.94544 0.93026 1.54876 0.93385 1.19209 0.94100 0.93269 0.95672 1.23917 0.94144 0.95782 0.85664 0.88790 1.24233 0.96353 0.88135 0.95791 1.88829 1.42297 1.36567 1.62719 1.22811 0.92217 0.77416 0.87032 0.84338 1.22434 1.07780 0.90639 0.87338 1.21893 1.03675 0.97239 0.94881 1.21971 1.05430 0.94873 0.96029 1.23056 1.10016 0.91182 0.83067 1.98418 1.97081 1.87947 1.10315 1.84035 1.69369 1.40307 1.14609 1.89704 1.74672 1.25160 1.40812 0.93398 0.99215 0.95383 0.90554 0.85745 0.78910 0.78416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.65 21.45 0.29 -58.21 15 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 15 3 Si 1.12 51.62 29.90 68.60 2.05 53.68 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.61 -35.44 9.00 25.60 0.23 -35.21 15 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 15 9 C 0.01 0.74 3.94 29.85 0.12 0.86 15 10 C 0.06 2.51 3.33 31.09 0.10 2.61 15 11 H 0.09 3.49 8.14 -2.39 -0.02 3.47 15 12 C 0.03 0.99 7.66 72.48 0.56 1.54 15 13 O -0.38 -12.31 11.25 -126.01 -1.42 -13.72 15 14 C 0.30 9.90 4.36 71.24 0.31 10.21 15 15 H 0.14 3.55 8.14 -2.39 -0.02 3.53 15 16 C -0.03 -1.02 6.77 24.83 0.17 -0.85 15 17 C -0.16 -3.74 10.81 22.19 0.24 -3.50 15 18 C -0.16 -3.61 10.88 22.23 0.24 -3.36 15 19 C 0.00 0.08 7.93 67.00 0.53 0.62 15 20 Cl 0.03 0.81 29.30 -2.72 -0.08 0.74 15 21 O -0.18 -6.81 10.46 7.55 0.08 -6.73 15 22 O -0.38 -16.83 10.98 -121.39 -1.33 -18.17 15 23 H 0.26 16.06 7.22 -92.71 -0.67 15.39 15 24 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 15 25 H 0.03 1.43 8.01 -2.39 -0.02 1.41 15 26 H 0.08 2.57 7.85 -2.39 -0.02 2.55 15 27 H 0.12 3.01 8.14 -2.39 -0.02 2.99 15 28 H 0.19 3.17 8.06 -2.91 -0.02 3.14 15 29 H 0.20 2.74 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -71.87 276.37 3.82 -68.05 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.27 Total: 3.19 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 2.96 Total: -28.82 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.29 Total: -58.21 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.67 Total: -38.62 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.68 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.74 kcal Total: -71.87 3.82 -68.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260068509.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds