Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00374 * 2 1 4 4 H 1.48499 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47483 * 300.00472 * 3 2 1 6 6 H 1.48498 * 109.46714 * 60.00401 * 3 2 1 7 7 C 1.37886 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 173.31440 * 7 2 1 9 9 C 1.50697 * 119.99823 * 353.31301 * 7 2 1 10 10 C 1.50701 * 115.55227 * 298.62403 * 9 7 2 11 11 C 1.38249 * 119.97329 * 114.30313 * 10 9 7 12 12 C 1.38361 * 120.01342 * 179.76738 * 11 10 9 13 13 F 1.35096 * 120.02376 * 180.23135 * 12 11 10 14 14 C 1.38695 * 119.95559 * 0.51406 * 12 11 10 15 15 F 1.35100 * 120.02958 * 179.72063 * 14 12 11 16 16 C 1.38358 * 119.94094 * 359.74281 * 14 12 11 17 17 C 1.38326 * 119.97004 * 294.58544 * 10 9 7 18 18 Cl 1.73599 * 119.97904 * 359.95374 * 17 10 9 19 19 C 1.52999 * 117.49709 * 152.95775 * 9 7 2 20 20 C 1.52997 * 117.49939 * 84.29602 * 9 7 2 21 21 H 0.97005 * 119.99689 * 354.99389 * 1 2 3 22 22 H 1.07998 * 119.98883 * 0.02562 * 11 10 9 23 23 H 1.08003 * 120.00378 * 179.97438 * 16 14 12 24 24 H 1.08996 * 117.49954 * 359.97438 * 19 9 7 25 25 H 1.08996 * 117.50110 * 145.01938 * 19 9 7 26 26 H 1.09005 * 117.49777 * 214.97302 * 20 9 7 27 27 H 1.09002 * 117.49903 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0789 -1.1973 -0.1094 9 6 1.2586 -2.4948 0.1509 10 6 0.4950 -2.6601 1.4396 11 6 -0.8855 -2.7310 1.4203 12 6 -1.5871 -2.8876 2.6025 13 9 -2.9359 -2.9616 2.5834 14 6 -0.9050 -2.9626 3.8078 15 9 -1.5889 -3.1098 4.9636 16 6 0.4763 -2.8861 3.8255 17 6 1.1758 -2.7348 2.6414 18 17 2.9090 -2.6394 2.6639 19 6 1.8899 -3.7466 -0.4617 20 6 0.6563 -3.1149 -1.1115 21 1 -0.4850 0.8369 0.0733 22 1 -1.4162 -2.6683 0.4817 23 1 1.0084 -2.9439 4.7636 24 1 2.8445 -3.6294 -0.9745 25 1 1.7527 -4.6898 0.0672 26 1 -0.2920 -3.6427 -1.0098 27 1 0.7992 -2.5818 -2.0515 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079938.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -62.111533 kcal Electronic energy + Delta-G solvation = -17021.746215 eV Core-core repulsion = 13827.667543 eV Total energy + Delta-G solvation = -3194.078672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.48373 -49.56371 -40.42755 -37.58159 -37.09153 -34.02704 -31.70296 -30.85365 -27.62616 -24.65986 -24.03473 -22.68380 -21.31396 -19.16383 -18.62116 -18.11017 -17.41456 -17.31750 -16.54121 -16.15793 -15.99828 -15.55199 -15.25210 -15.00438 -14.38750 -14.13265 -13.88633 -13.46618 -12.95647 -12.85782 -12.59040 -12.28237 -12.00210 -11.96884 -11.67215 -11.41643 -11.12459 -10.57455 -10.15272 -9.83307 -9.31746 -8.08009 -6.14720 -0.11297 0.06669 1.26302 1.41497 1.47845 1.55112 2.35937 2.46834 2.81633 3.12607 3.30934 3.54452 3.74012 3.86347 4.05959 4.48634 4.58258 4.66031 4.71031 4.78289 4.90879 5.02476 5.22982 5.40582 5.51861 5.65101 5.73228 5.84287 6.38238 6.86413 7.50103 8.98096 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.009281 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.026959 B = 3016.040635 C = 3196.301731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.034 3.966 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.479 4.479 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.022 3.978 11 C -0.096 4.096 12 C 0.056 3.944 13 F -0.137 7.137 14 C 0.050 3.950 15 F -0.131 7.131 16 C -0.118 4.118 17 C -0.021 4.021 18 Cl -0.040 7.040 19 C -0.166 4.166 20 C -0.180 4.180 21 H 0.258 0.742 22 H 0.141 0.859 23 H 0.175 0.825 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -6.188 5.261 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.051 3.949 10 C 0.020 3.980 11 C -0.116 4.116 12 C 0.035 3.965 13 F -0.115 7.115 14 C 0.030 3.970 15 F -0.110 7.110 16 C -0.137 4.137 17 C -0.049 4.049 18 Cl -0.011 7.011 19 C -0.203 4.203 20 C -0.218 4.218 21 H 0.067 0.933 22 H 0.159 0.841 23 H 0.193 0.807 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.011 -6.059 5.236 8.072 hybrid contribution -0.162 1.211 0.061 1.223 sum 0.849 -4.849 5.298 7.232 Atomic orbital electron populations 1.70065 1.06611 1.27150 1.49340 1.25465 0.95357 1.01171 0.94713 0.85906 0.79790 0.81317 0.77174 1.19012 1.21260 1.21274 1.20522 0.92722 0.89020 1.49384 0.92186 1.17622 0.97687 0.92641 0.86955 1.19449 0.91942 0.91341 0.95248 1.20818 0.93942 0.99977 0.96816 1.17796 0.77289 1.07494 0.93884 1.91462 1.28671 1.94113 1.97303 1.17241 0.90115 1.09343 0.80317 1.91482 1.79564 1.93714 1.46225 1.20925 0.90867 1.02478 0.99429 1.20522 0.86554 1.04413 0.93378 1.98335 1.07697 1.96347 1.98740 1.22928 0.96913 0.96164 1.04337 1.22865 0.95889 1.04349 0.98695 0.93298 0.84112 0.80729 0.89429 0.89321 0.90331 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.98 12.68 21.45 0.27 -46.71 15 2 C 0.03 1.74 5.36 84.66 0.45 2.19 15 3 Si 0.93 41.17 29.55 68.60 2.03 43.20 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 7 C -0.48 -23.32 7.76 25.60 0.20 -23.13 15 8 H 0.06 2.95 7.82 -2.91 -0.02 2.93 15 9 C 0.05 2.23 0.84 -53.68 -0.05 2.18 15 10 C 0.02 0.90 4.55 -19.84 -0.09 0.80 15 11 C -0.10 -3.89 8.99 22.30 0.20 -3.69 15 12 C 0.06 2.09 7.31 22.41 0.16 2.26 15 13 F -0.14 -5.10 17.18 44.97 0.77 -4.32 15 14 C 0.05 1.74 7.31 22.41 0.16 1.90 15 15 F -0.13 -4.32 17.18 44.97 0.77 -3.55 15 16 C -0.12 -3.83 9.81 22.33 0.22 -3.61 15 17 C -0.02 -0.80 6.27 22.32 0.14 -0.66 15 18 Cl -0.04 -1.41 27.13 -2.72 -0.07 -1.49 15 19 C -0.17 -6.21 9.94 30.62 0.30 -5.91 15 20 C -0.18 -7.35 9.43 30.62 0.29 -7.06 15 21 H 0.26 13.28 8.32 -92.70 -0.77 12.51 15 22 H 0.14 5.84 7.03 -2.91 -0.02 5.81 15 23 H 0.18 4.50 8.06 -2.91 -0.02 4.48 15 24 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 25 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.08 2.98 7.14 -2.38 -0.02 2.96 15 27 H 0.07 3.07 8.14 -2.39 -0.02 3.05 15 Total: -1.00 -51.46 265.41 6.97 -44.48 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.21 Total: 3.10 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 2.00 Total: -34.72 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.27 Total: -46.71 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.55 Total: -7.87 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.49 kcal Total: -51.46 6.97 -44.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079938.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.631 kcal (2) G-P(sol) polarization free energy of solvation -51.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds