Wall clock time and date at job start Mon Mar 30 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00332 * 2 1 4 4 H 1.48501 * 109.46974 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47195 * 120.00188 * 3 2 1 6 6 H 1.48495 * 109.47458 * 240.00542 * 3 2 1 7 7 C 1.37882 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99789 * 185.62716 * 7 2 1 9 9 C 1.50701 * 120.00199 * 5.63050 * 7 2 1 10 10 C 1.50697 * 115.54818 * 39.61729 * 9 7 2 11 11 C 1.38433 * 120.01495 * 83.10929 * 10 9 7 12 12 F 1.35102 * 120.00374 * 0.02562 * 11 10 9 13 13 C 1.38448 * 119.99073 * 179.77124 * 11 10 9 14 14 C 1.38326 * 120.00886 * 0.52183 * 13 11 10 15 15 Cl 1.73601 * 119.98633 * 179.72830 * 14 13 11 16 16 C 1.38330 * 120.02673 * 359.71002 * 14 13 11 17 17 C 1.38428 * 120.01377 * 263.38437 * 10 9 7 18 18 F 1.35100 * 120.00322 * 359.95262 * 17 10 9 19 19 C 1.52998 * 117.49922 * 253.90884 * 9 7 2 20 20 C 1.52999 * 117.49847 * 185.28560 * 9 7 2 21 21 H 0.96995 * 119.99826 * 354.99447 * 1 2 3 22 22 H 1.07995 * 119.99807 * 180.25367 * 13 11 10 23 23 H 1.07999 * 119.99240 * 180.02562 * 16 14 13 24 24 H 1.09002 * 117.49903 * 359.97438 * 19 9 7 25 25 H 1.09000 * 117.49784 * 145.02408 * 19 9 7 26 26 H 1.09001 * 117.49622 * 214.98045 * 20 9 7 27 27 H 1.09000 * 117.49988 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7463 0.0006 5 1 3.1031 1.6962 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0806 -1.1965 0.0912 9 6 1.2564 -2.4960 -0.1292 10 6 0.1027 -2.4896 -1.0986 11 6 0.3324 -2.6836 -2.4498 12 9 1.5912 -2.8793 -2.8998 13 6 -0.7284 -2.6823 -3.3394 14 6 -2.0166 -2.4764 -2.8795 15 17 -3.3457 -2.4679 -3.9963 16 6 -2.2464 -2.2777 -1.5299 17 6 -1.1868 -2.2839 -0.6389 18 9 -1.4112 -2.0899 0.6791 19 6 1.1199 -3.3594 1.1265 20 6 2.0626 -3.7899 0.0009 21 1 -0.4850 0.8368 0.0733 22 1 -0.5498 -2.8377 -4.3930 23 1 -3.2524 -2.1174 -1.1714 24 1 1.5716 -2.9860 2.0456 25 1 0.1953 -3.9229 1.2517 26 1 1.7582 -4.6365 -0.6143 27 1 3.1341 -3.6995 0.1792 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260080034.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:40 Heat of formation + Delta-G solvation = -46.079875 kcal Electronic energy + Delta-G solvation = -17370.891887 eV Core-core repulsion = 14177.508400 eV Total energy + Delta-G solvation = -3193.383488 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.12431 -47.76281 -38.42457 -36.60433 -35.59644 -32.23854 -29.68426 -29.56316 -25.74915 -22.79269 -22.34552 -21.07444 -19.57284 -17.49388 -16.79127 -16.37099 -15.15517 -15.05507 -14.76785 -14.62341 -14.20712 -14.15869 -13.67720 -13.11724 -12.53354 -12.38263 -12.26860 -11.42506 -11.28811 -11.03478 -10.92980 -10.74873 -10.59461 -10.51950 -10.35869 -9.66615 -9.39411 -8.94018 -8.39013 -8.04115 -7.77529 -6.13729 -4.22778 1.64933 1.74294 2.35278 3.24272 3.29896 3.32296 4.04153 4.29205 4.81846 4.94107 5.12849 5.28420 5.45384 5.54672 5.61021 6.03364 6.18419 6.28783 6.38143 6.47263 6.58200 6.80058 6.85198 6.95484 7.04380 7.23226 7.51895 7.75312 8.16879 8.72999 9.37678 10.86196 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.009054 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.943782 B = 3091.841401 C = 3345.306246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.067 0.933 9 C 0.075 3.925 10 C -0.051 4.051 11 C 0.135 3.865 12 F -0.127 7.127 13 C -0.181 4.181 14 C 0.002 3.998 15 Cl -0.077 7.077 16 C -0.184 4.184 17 C 0.218 3.782 18 F -0.109 7.109 19 C -0.189 4.189 20 C -0.195 4.195 21 H 0.267 0.733 22 H 0.136 0.864 23 H 0.136 0.864 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -4.785 -4.222 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.075 3.925 10 C -0.053 4.053 11 C 0.115 3.885 12 F -0.106 7.106 13 C -0.201 4.201 14 C -0.024 4.024 15 Cl -0.048 7.048 16 C -0.204 4.204 17 C 0.197 3.803 18 F -0.087 7.087 19 C -0.227 4.227 20 C -0.232 4.232 21 H 0.077 0.923 22 H 0.154 0.846 23 H 0.154 0.846 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.469 -4.629 -4.343 7.763 hybrid contribution 0.418 1.081 0.046 1.160 sum -4.052 -3.548 -4.297 6.890 Atomic orbital electron populations 1.69797 1.05939 1.27487 1.48008 1.24993 0.94958 0.99367 0.93957 0.86512 0.79573 0.82360 0.78830 1.21082 1.20060 1.19993 1.20413 0.92945 0.87915 1.51068 0.91447 1.17501 0.91856 0.90992 0.92156 1.19511 0.94556 0.98231 0.92993 1.16869 0.79066 1.01483 0.91126 1.91477 1.37537 1.92242 1.89307 1.20632 0.90395 1.08914 1.00184 1.19835 0.87809 1.05128 0.89673 1.98326 1.47040 1.97198 1.62285 1.20758 0.99694 1.08546 0.91369 1.16494 0.91164 0.94108 0.78550 1.91501 1.94893 1.91244 1.31040 1.23038 0.99361 1.05681 0.94626 1.22921 0.97392 0.99219 1.03703 0.92289 0.84611 0.84632 0.89718 0.91414 0.91151 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 9.36 55.43 0.52 -22.89 15 2 C 0.07 1.88 5.31 -17.82 -0.09 1.79 15 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 15 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.49 -12.89 9.02 -34.44 -0.31 -13.20 15 8 H 0.07 1.78 7.82 -52.49 -0.41 1.36 15 9 C 0.08 1.82 1.34 -156.81 -0.21 1.61 15 10 C -0.05 -1.17 3.98 -104.48 -0.42 -1.58 15 11 C 0.13 2.86 7.19 -39.43 -0.28 2.58 15 12 F -0.13 -2.74 16.55 2.25 0.04 -2.70 15 13 C -0.18 -3.32 9.81 -39.47 -0.39 -3.71 15 14 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 15 15 Cl -0.08 -1.14 28.95 -51.86 -1.50 -2.64 15 16 C -0.18 -3.48 9.81 -39.47 -0.39 -3.86 15 17 C 0.22 4.79 5.38 -39.43 -0.21 4.58 15 18 F -0.11 -2.54 14.54 2.25 0.03 -2.50 15 19 C -0.19 -4.18 8.97 -26.73 -0.24 -4.42 15 20 C -0.20 -4.14 9.61 -26.73 -0.26 -4.39 15 21 H 0.27 6.95 8.32 -40.82 -0.34 6.61 15 22 H 0.14 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.14 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.08 1.87 8.14 -51.93 -0.42 1.45 15 25 H 0.07 1.42 7.71 -51.93 -0.40 1.02 15 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.08 1.71 8.14 -51.93 -0.42 1.28 15 LS Contribution 261.39 15.07 3.94 3.94 Total: -1.00 -26.51 261.39 -7.10 -33.61 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -2.06 Total: -1.68 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.05 Total: -20.82 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.52 Total: -22.89 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.07 Total: -5.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.51 -7.10 -33.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260080034.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.468 kcal (2) G-P(sol) polarization free energy of solvation -26.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds