Wall clock time and date at job start Mon Mar 30 2020 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99548 * 2 1 4 4 H 1.48500 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47200 * 299.99677 * 3 2 1 6 6 H 1.48499 * 109.47458 * 60.00185 * 3 2 1 7 7 C 1.37866 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00520 * 0.02562 * 7 2 1 10 10 C 1.50701 * 115.54681 * 325.58153 * 9 7 2 11 11 C 1.38253 * 119.99472 * 114.61119 * 10 9 7 12 12 C 1.38323 * 120.05926 * 180.02562 * 11 10 9 13 13 Cl 1.73595 * 119.97906 * 179.97438 * 12 11 10 14 14 C 1.38367 * 120.04427 * 359.97438 * 12 11 10 15 15 C 1.38362 * 119.98421 * 0.02562 * 14 12 11 16 16 F 1.35102 * 120.02551 * 179.97438 * 15 14 12 17 17 C 1.38371 * 119.99703 * 294.86317 * 10 9 7 18 18 F 1.35099 * 120.01797 * 359.97438 * 17 10 9 19 19 C 1.52999 * 117.50152 * 111.24736 * 9 7 2 20 20 C 1.52994 * 117.50659 * 179.91249 * 9 7 2 21 21 H 0.97001 * 120.00131 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.97063 * 0.02562 * 11 10 9 23 23 H 1.07996 * 120.00510 * 180.02562 * 14 12 11 24 24 H 1.09003 * 117.49782 * 215.00702 * 19 9 7 25 25 H 1.08993 * 117.49709 * 0.02982 * 19 9 7 26 26 H 1.09007 * 117.49785 * 359.97438 * 20 9 7 27 27 H 1.09004 * 117.50488 * 144.99233 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 -0.0454 -2.5011 0.7686 11 6 -1.2438 -2.6729 0.1010 12 6 -2.4348 -2.6745 0.8046 13 17 -3.9384 -2.8898 -0.0358 14 6 -2.4284 -2.5045 2.1778 15 6 -1.2300 -2.3323 2.8477 16 9 -1.2229 -2.1657 4.1884 17 6 -0.0367 -2.3257 2.1411 18 9 1.1339 -2.1531 2.7930 19 6 1.3245 -3.3571 -1.2641 20 6 2.0733 -3.7894 -0.0009 21 1 -0.4850 0.8400 -0.0004 22 1 -1.2502 -2.8061 -0.9707 23 1 -3.3586 -2.5062 2.7265 24 1 0.4348 -3.9230 -1.5406 25 1 1.9179 -2.9778 -2.0959 26 1 3.1592 -3.6944 -0.0023 27 1 1.6764 -4.6398 0.5536 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:13 Heat of formation + Delta-G solvation = -50.408636 kcal Electronic energy + Delta-G solvation = -17223.737200 eV Core-core repulsion = 14030.166003 eV Total energy + Delta-G solvation = -3193.571197 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.69704 -47.65581 -38.68792 -36.48627 -35.51950 -32.29182 -29.82477 -29.34926 -25.82543 -23.09480 -22.30726 -21.07106 -19.62166 -17.52144 -16.78481 -16.39363 -15.77401 -15.53505 -14.75266 -14.66818 -14.10572 -13.98932 -13.67757 -13.22806 -12.61676 -12.54099 -12.13781 -11.81989 -11.10957 -11.06669 -10.95908 -10.71638 -10.57809 -10.48914 -10.35843 -9.77673 -9.30510 -9.11133 -8.54151 -8.04938 -7.75886 -6.15923 -4.26024 1.61511 1.75685 2.49199 3.20780 3.30144 3.33106 4.04642 4.27775 4.56447 4.80827 5.06001 5.32115 5.40869 5.57196 5.65291 6.00297 6.09689 6.25164 6.36492 6.47135 6.50619 6.66690 6.75726 6.99748 7.06133 7.17632 7.47395 7.69870 8.11809 8.70707 9.34787 10.82697 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.009305 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.051515 B = 3008.496165 C = 3180.967914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.486 4.486 8 H 0.069 0.931 9 C 0.072 3.928 10 C 0.055 3.945 11 C -0.063 4.063 12 C -0.020 4.020 13 Cl -0.080 7.080 14 C -0.151 4.151 15 C 0.062 3.938 16 F -0.138 7.138 17 C 0.086 3.914 18 F -0.123 7.123 19 C -0.199 4.199 20 C -0.196 4.196 21 H 0.266 0.734 22 H 0.136 0.864 23 H 0.138 0.862 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -5.241 1.133 7.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.523 4.523 8 H 0.087 0.913 9 C 0.071 3.929 10 C 0.052 3.948 11 C -0.082 4.082 12 C -0.047 4.047 13 Cl -0.051 7.051 14 C -0.170 4.170 15 C 0.042 3.958 16 F -0.117 7.117 17 C 0.065 3.935 18 F -0.101 7.101 19 C -0.237 4.237 20 C -0.233 4.233 21 H 0.076 0.924 22 H 0.153 0.847 23 H 0.156 0.844 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.768 -5.094 1.136 7.069 hybrid contribution 0.348 1.149 0.264 1.229 sum -4.419 -3.945 1.400 6.087 Atomic orbital electron populations 1.69872 1.05736 1.26980 1.48390 1.25014 0.95058 0.99504 0.93854 0.86390 0.80160 0.83001 0.77762 1.19521 1.20760 1.20780 1.20503 0.92612 0.87551 1.51609 0.91295 1.17713 0.89895 0.91218 0.94074 1.19005 0.95574 0.90482 0.89689 1.20586 0.88925 0.98512 1.00193 1.20350 0.86794 1.06111 0.91474 1.98321 1.32821 1.95785 1.78217 1.20385 0.96699 1.06851 0.93098 1.17309 0.93252 1.07914 0.77314 1.91452 1.97293 1.93529 1.29417 1.17380 0.80106 1.05335 0.90669 1.91478 1.45186 1.92705 1.80745 1.23138 1.01518 1.06064 0.92945 1.22952 0.98487 0.99296 1.02566 0.92383 0.84668 0.84422 0.91021 0.89604 0.89742 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.93 10.88 55.43 0.60 -22.33 15 2 C 0.07 1.81 5.37 -17.82 -0.10 1.72 15 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.49 -12.53 8.74 -34.45 -0.30 -12.83 15 8 H 0.07 1.78 7.81 -52.48 -0.41 1.37 15 9 C 0.07 1.66 1.72 -156.82 -0.27 1.39 15 10 C 0.05 1.23 3.05 -104.57 -0.32 0.91 15 11 C -0.06 -1.29 8.36 -39.54 -0.33 -1.62 15 12 C -0.02 -0.38 6.32 -39.50 -0.25 -0.63 15 13 Cl -0.08 -1.26 28.95 -51.86 -1.50 -2.76 15 14 C -0.15 -2.73 9.81 -39.49 -0.39 -3.11 15 15 C 0.06 1.27 7.31 -39.37 -0.29 0.98 15 16 F -0.14 -2.73 17.18 2.25 0.04 -2.69 15 17 C 0.09 1.94 7.17 -39.37 -0.28 1.66 15 18 F -0.12 -2.93 16.49 2.25 0.04 -2.89 15 19 C -0.20 -4.04 9.43 -26.69 -0.25 -4.29 15 20 C -0.20 -3.96 9.94 -26.70 -0.27 -4.23 15 21 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 22 H 0.14 2.67 7.01 -52.49 -0.37 2.30 15 23 H 0.14 2.11 8.06 -52.49 -0.42 1.68 15 24 H 0.07 1.32 7.13 -51.93 -0.37 0.95 15 25 H 0.09 1.74 8.14 -51.93 -0.42 1.31 15 26 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -25.91 264.31 -6.87 -32.79 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -1.97 Total: -1.56 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.04 Total: -20.05 kcal Atomic # 7 Polarization: -22.93 SS G_CDS: 0.60 Total: -22.33 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.08 Total: -5.58 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.91 -6.87 -32.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.621 kcal (2) G-P(sol) polarization free energy of solvation -25.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds