Wall clock time and date at job start Mon Mar 30 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99719 * 2 1 4 4 H 1.48500 * 109.46816 * 240.00486 * 3 2 1 5 5 H 1.48502 * 109.47154 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47160 * 120.00279 * 3 2 1 7 7 C 1.37868 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99777 * 187.62290 * 7 2 1 9 9 C 1.50704 * 120.00240 * 7.62222 * 7 2 1 10 10 C 1.50698 * 115.54784 * 275.20726 * 9 7 2 11 11 C 1.38219 * 119.98768 * 114.71282 * 10 9 7 12 12 C 1.38400 * 120.01345 * 179.76765 * 11 10 9 13 13 F 1.35104 * 120.00583 * 180.22938 * 12 11 10 14 14 C 1.38584 * 119.98914 * 0.48127 * 12 11 10 15 15 Cl 1.73599 * 120.01197 * 179.74665 * 14 12 11 16 16 C 1.38265 * 119.97244 * 359.77354 * 14 12 11 17 17 C 1.38430 * 119.98904 * 294.98699 * 10 9 7 18 18 F 1.35097 * 119.99543 * 359.97438 * 17 10 9 19 19 C 1.53003 * 117.49892 * 129.53574 * 9 7 2 20 20 C 1.52998 * 117.49629 * 60.87791 * 9 7 2 21 21 H 0.97007 * 120.00418 * 354.97072 * 1 2 3 22 22 H 1.08001 * 119.99526 * 0.02562 * 11 10 9 23 23 H 1.08008 * 120.00341 * 179.97438 * 16 14 12 24 24 H 1.09001 * 117.49415 * 0.02562 * 19 9 7 25 25 H 1.09001 * 117.49597 * 145.02028 * 19 9 7 26 26 H 1.09000 * 117.49662 * 214.97741 * 20 9 7 27 27 H 1.09000 * 117.50070 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0774 -1.1981 0.1235 9 6 1.2610 -2.4933 -0.1742 10 6 0.6784 -3.0821 1.0847 11 6 -0.6923 -3.1863 1.2287 12 6 -1.2277 -3.7313 2.3826 13 9 -2.5675 -3.8374 2.5212 14 6 -0.3896 -4.1635 3.3982 15 17 -1.0608 -4.8412 4.8486 16 6 0.9813 -4.0542 3.2559 17 6 1.5161 -3.5131 2.0990 18 9 2.8557 -3.4063 1.9598 19 6 1.7776 -3.4664 -1.2359 20 6 0.4792 -2.6915 -1.4744 21 1 -0.4851 0.8368 0.0736 22 1 -1.3455 -2.8462 0.4387 23 1 1.6350 -4.3904 4.0472 24 1 2.6555 -3.1669 -1.8085 25 1 1.6957 -4.5324 -1.0240 26 1 -0.4563 -3.2481 -1.4192 27 1 0.5023 -1.8819 -2.2039 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211421.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:44 Heat of formation + Delta-G solvation = -51.677364 kcal Electronic energy + Delta-G solvation = -16913.232219 eV Core-core repulsion = 13719.606006 eV Total energy + Delta-G solvation = -3193.626213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.52301 -48.16603 -38.72260 -36.68313 -35.67174 -32.12208 -30.28230 -29.30242 -25.81728 -23.27203 -22.41906 -21.06016 -19.67065 -17.46237 -16.94304 -16.66962 -15.92218 -15.43721 -14.76178 -14.67845 -14.39730 -13.99835 -13.60231 -13.26751 -13.10227 -12.46733 -12.28965 -11.99462 -11.17946 -11.09727 -11.03953 -10.86184 -10.75960 -10.54372 -10.35118 -9.84263 -9.38968 -8.65485 -8.52950 -8.32115 -7.80801 -6.19997 -4.27753 1.39253 1.47478 2.22099 3.23546 3.28761 3.31361 3.83301 4.28054 4.46236 4.83089 4.92677 5.07237 5.29979 5.38930 5.63097 5.88292 6.09413 6.18852 6.25018 6.28570 6.56035 6.60674 6.86524 6.94076 7.04266 7.27742 7.38887 7.73246 8.17684 8.74292 9.38267 10.87102 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.023766 B = 0.007303 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.888383 B = 3833.197000 C = 3893.209638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.075 3.925 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.064 3.936 10 C 0.002 3.998 11 C -0.101 4.101 12 C 0.091 3.909 13 F -0.134 7.134 14 C -0.072 4.072 15 Cl -0.065 7.065 16 C -0.132 4.132 17 C 0.108 3.892 18 F -0.124 7.124 19 C -0.194 4.194 20 C -0.152 4.152 21 H 0.265 0.735 22 H 0.152 0.848 23 H 0.144 0.856 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -7.228 4.035 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.530 4.530 8 H 0.085 0.915 9 C 0.063 3.937 10 C 0.001 3.999 11 C -0.120 4.120 12 C 0.071 3.929 13 F -0.112 7.112 14 C -0.099 4.099 15 Cl -0.036 7.036 16 C -0.152 4.152 17 C 0.088 3.912 18 F -0.102 7.102 19 C -0.231 4.231 20 C -0.190 4.190 21 H 0.074 0.926 22 H 0.170 0.830 23 H 0.162 0.838 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.212 -7.149 4.095 8.327 hybrid contribution 0.249 0.974 0.351 1.065 sum -0.963 -6.174 4.446 7.669 Atomic orbital electron populations 1.69944 1.05938 1.27415 1.47266 1.25019 0.94910 0.99191 0.93920 0.86600 0.79687 0.82566 0.78947 1.19917 1.21126 1.20037 1.20328 0.93261 0.87595 1.51820 0.91470 1.17582 0.98619 0.94177 0.83315 1.19971 0.91468 0.91063 0.97439 1.20940 0.95651 0.98851 0.96544 1.17420 0.77075 1.03292 0.95122 1.91484 1.29534 1.94195 1.96026 1.20333 0.92828 1.07141 0.89627 1.98338 1.85530 1.83810 1.35924 1.20661 0.93035 1.03273 0.98220 1.17263 0.78134 1.01380 0.94416 1.91494 1.29045 1.93810 1.95888 1.23053 0.98611 0.95581 1.05826 1.22656 0.92722 1.01226 1.02366 0.92554 0.83015 0.83825 0.89599 0.91346 0.91343 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.03 12.98 55.43 0.72 -22.31 15 2 C 0.07 1.93 5.38 -17.82 -0.10 1.84 15 3 Si 0.89 20.28 29.55 -169.99 -5.02 15.26 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.49 -12.68 8.48 -34.44 -0.29 -12.97 15 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 15 9 C 0.06 1.46 1.18 -156.81 -0.19 1.28 15 10 C 0.00 0.05 5.12 -104.56 -0.54 -0.49 15 11 C -0.10 -2.03 9.20 -39.53 -0.36 -2.40 15 12 C 0.09 1.70 7.27 -39.39 -0.29 1.41 15 13 F -0.13 -2.43 16.84 2.25 0.04 -2.39 15 14 C -0.07 -1.24 6.32 -39.44 -0.25 -1.49 15 15 Cl -0.06 -0.97 28.62 -51.86 -1.48 -2.45 15 16 C -0.13 -2.27 9.81 -39.49 -0.39 -2.66 15 17 C 0.11 2.16 7.17 -39.43 -0.28 1.88 15 18 F -0.12 -2.56 16.56 2.25 0.04 -2.52 15 19 C -0.19 -3.93 9.94 -26.69 -0.27 -4.20 15 20 C -0.15 -3.26 8.99 -26.69 -0.24 -3.50 15 21 H 0.26 6.78 8.32 -40.82 -0.34 6.44 15 22 H 0.15 3.09 7.00 -52.49 -0.37 2.72 15 23 H 0.14 2.07 8.06 -52.48 -0.42 1.64 15 24 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.07 1.35 7.12 -51.93 -0.37 0.98 15 27 H 0.09 1.99 8.14 -51.93 -0.42 1.57 15 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -25.66 267.50 -6.84 -32.50 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -1.97 Total: -0.82 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -3.18 Total: -21.30 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.72 Total: -22.31 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.08 Total: -4.91 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.48 Total: -2.45 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.66 -6.84 -32.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211421.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.182 kcal (2) G-P(sol) polarization free energy of solvation -25.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds