Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48500 * 109.46977 * 85.65971 * 3 2 1 5 5 H 1.48494 * 109.46885 * 205.65905 * 3 2 1 6 6 H 1.48501 * 109.47022 * 325.66081 * 3 2 1 7 7 C 1.37877 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99621 * 2.65413 * 7 2 1 9 9 C 1.50699 * 120.00375 * 182.65496 * 7 2 1 10 10 C 1.50697 * 115.55072 * 246.65871 * 9 7 2 11 11 C 1.38447 * 120.02276 * 83.83888 * 10 9 7 12 12 F 1.35103 * 119.99850 * 0.02562 * 11 10 9 13 13 C 1.38441 * 120.00190 * 179.74870 * 11 10 9 14 14 C 1.38235 * 120.03241 * 0.52878 * 13 11 10 15 15 C 1.38287 * 120.03570 * 359.74747 * 14 13 11 16 16 Cl 1.73603 * 119.99788 * 179.97438 * 15 14 13 17 17 C 1.38375 * 120.01668 * 264.11931 * 10 9 7 18 18 F 1.35099 * 120.01966 * 359.97438 * 17 10 9 19 19 C 1.52995 * 117.50161 * 100.94452 * 9 7 2 20 20 C 1.53001 * 60.00181 * 252.51391 * 19 9 7 21 21 H 0.96996 * 120.00110 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.98931 * 180.27723 * 13 11 10 23 23 H 1.07999 * 119.98262 * 179.72064 * 14 13 11 24 24 H 1.09001 * 117.49622 * 0.02562 * 19 9 7 25 25 H 1.08996 * 117.50145 * 145.02525 * 19 9 7 26 26 H 1.08998 * 117.49767 * 252.50853 * 20 19 9 27 27 H 1.08999 * 117.50014 * 107.49102 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4049 2.0994 1.3961 5 1 3.5895 1.4154 -0.6062 6 1 1.4954 2.6245 -0.7898 7 6 2.0046 -1.1940 -0.0005 8 1 1.4654 -2.1288 -0.0443 9 6 3.5104 -1.1948 0.0599 10 6 4.2101 -1.7042 -1.1737 11 6 4.4363 -0.8540 -2.2427 12 9 4.0301 0.4330 -2.1799 13 6 5.0838 -1.3210 -3.3737 14 6 5.4951 -2.6391 -3.4408 15 6 5.2648 -3.4911 -2.3762 16 17 5.7812 -5.1463 -2.4618 17 6 4.6218 -3.0236 -1.2410 18 9 4.3971 -3.8556 -0.2006 19 6 4.1629 -1.4842 1.4131 20 6 4.1866 -0.0657 0.8402 21 1 -0.4850 0.8400 -0.0004 22 1 5.2642 -0.6564 -4.2057 23 1 5.9962 -3.0037 -4.3253 24 1 3.5031 -1.6745 2.2596 25 1 5.0986 -2.0433 1.4114 26 1 5.1378 0.3083 0.4615 27 1 3.5424 0.6776 1.3098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260249899.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = -25.325969 kcal Electronic energy + Delta-G solvation = -17311.258020 eV Core-core repulsion = 14118.774490 eV Total energy + Delta-G solvation = -3192.483531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.52695 -48.50957 -38.86512 -36.95565 -36.08990 -32.19806 -30.37132 -29.79107 -25.91834 -23.39922 -22.78067 -21.81091 -19.72725 -17.80402 -16.93003 -16.71695 -15.85707 -15.63450 -15.42355 -15.09335 -14.79705 -14.24250 -13.86861 -13.07496 -12.97467 -12.66791 -12.66458 -12.05559 -11.85266 -11.41053 -11.05549 -10.98487 -10.80782 -10.30395 -10.11371 -9.70527 -9.02900 -8.83782 -8.61721 -8.38828 -8.18440 -6.22708 -4.27518 1.09365 1.26940 2.12346 3.25141 3.41015 3.45598 3.54371 4.21838 4.35421 4.54452 4.68494 4.83370 5.02964 5.20854 5.30306 5.71648 5.84391 5.95134 6.02258 6.07512 6.24510 6.29006 6.32133 6.58450 6.66709 6.96455 7.06480 7.53668 8.33825 8.78525 9.37297 10.87389 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.029149 B = 0.008625 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.341867 B = 3245.605066 C = 3617.879068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.290 1.290 5 H -0.220 1.220 6 H -0.303 1.303 7 C -0.486 4.486 8 H 0.083 0.917 9 C 0.033 3.967 10 C -0.074 4.074 11 C 0.136 3.864 12 F -0.112 7.112 13 C -0.160 4.160 14 C -0.078 4.078 15 C -0.089 4.089 16 Cl -0.061 7.061 17 C 0.139 3.861 18 F -0.115 7.115 19 C -0.176 4.176 20 C -0.190 4.190 21 H 0.268 0.732 22 H 0.144 0.856 23 H 0.145 0.855 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 -3.534 -5.831 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.707 3.293 4 H -0.218 1.218 5 H -0.144 1.144 6 H -0.232 1.232 7 C -0.522 4.522 8 H 0.101 0.899 9 C 0.032 3.968 10 C -0.076 4.076 11 C 0.117 3.883 12 F -0.091 7.091 13 C -0.179 4.179 14 C -0.096 4.096 15 C -0.117 4.117 16 Cl -0.032 7.032 17 C 0.119 3.881 18 F -0.093 7.093 19 C -0.214 4.214 20 C -0.227 4.227 21 H 0.078 0.922 22 H 0.162 0.838 23 H 0.162 0.838 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.184 -3.567 -5.799 13.957 hybrid contribution 0.096 0.816 0.185 0.842 sum 12.280 -2.751 -5.614 13.780 Atomic orbital electron populations 1.69876 1.06514 1.27595 1.48259 1.25119 0.94808 0.99392 0.93206 0.87354 0.82435 0.82378 0.77136 1.21819 1.14404 1.23192 1.20160 0.85098 0.95005 1.51952 0.89922 1.17994 0.94503 0.98922 0.85361 1.19933 0.97439 0.91385 0.98891 1.17368 0.97015 0.80003 0.93952 1.91669 1.87750 1.33509 1.96139 1.21075 1.02306 0.96398 0.98160 1.20536 1.00002 0.91849 0.97261 1.20914 1.06692 0.87584 0.96530 1.98352 1.89439 1.17009 1.98374 1.16856 0.99147 0.87712 0.84429 1.91537 1.92284 1.70044 1.55424 1.23125 1.01327 0.97469 0.99460 1.22997 1.01233 0.92378 1.06068 0.92210 0.83790 0.83761 0.88720 0.90704 0.90106 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.96 15 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 3 Si 0.88 21.36 22.99 -169.99 -3.91 17.45 15 4 H -0.29 -6.99 6.84 56.52 0.39 -6.60 15 5 H -0.22 -4.92 3.25 56.52 0.18 -4.74 15 6 H -0.30 -7.58 7.11 56.52 0.40 -7.18 15 7 C -0.49 -13.51 9.57 -34.44 -0.33 -13.84 15 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 15 9 C 0.03 0.77 1.11 -156.82 -0.17 0.60 15 10 C -0.07 -1.53 5.00 -104.50 -0.52 -2.05 15 11 C 0.14 2.57 7.19 -39.43 -0.28 2.28 15 12 F -0.11 -2.30 12.71 2.25 0.03 -2.27 15 13 C -0.16 -2.31 10.02 -39.51 -0.40 -2.71 15 14 C -0.08 -1.04 9.83 -39.56 -0.39 -1.42 15 15 C -0.09 -1.40 6.33 -39.43 -0.25 -1.65 15 16 Cl -0.06 -0.84 28.62 -51.86 -1.48 -2.33 15 17 C 0.14 2.62 7.08 -39.40 -0.28 2.34 15 18 F -0.11 -2.26 15.29 2.25 0.03 -2.23 15 19 C -0.18 -3.67 8.98 -26.73 -0.24 -3.91 15 20 C -0.19 -4.08 6.41 -26.73 -0.17 -4.25 15 21 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 22 H 0.14 1.62 8.06 -52.49 -0.42 1.20 15 23 H 0.14 1.42 8.06 -52.49 -0.42 1.00 15 24 H 0.09 2.00 8.14 -51.93 -0.42 1.57 15 25 H 0.07 1.40 7.77 -51.93 -0.40 1.00 15 26 H 0.08 1.56 8.12 -51.93 -0.42 1.14 15 27 H 0.09 2.02 3.83 -51.93 -0.20 1.82 15 LS Contribution 248.08 15.07 3.74 3.74 Total: -1.00 -29.47 248.08 -6.03 -35.50 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -2.08 Total: -1.43 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -3.13 Total: -22.48 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.06 Total: -4.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -3.91 Total: 17.45 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.47 -6.03 -35.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249899.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.178 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds