Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48500 * 109.46977 * 85.65971 * 3 2 1 5 5 H 1.48494 * 109.46885 * 205.65905 * 3 2 1 6 6 H 1.48501 * 109.47022 * 325.66081 * 3 2 1 7 7 C 1.37877 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99621 * 2.65413 * 7 2 1 9 9 C 1.50699 * 120.00375 * 182.65496 * 7 2 1 10 10 C 1.50697 * 115.55072 * 246.65871 * 9 7 2 11 11 C 1.38447 * 120.02276 * 83.83888 * 10 9 7 12 12 F 1.35103 * 119.99850 * 0.02562 * 11 10 9 13 13 C 1.38441 * 120.00190 * 179.74870 * 11 10 9 14 14 C 1.38235 * 120.03241 * 0.52878 * 13 11 10 15 15 C 1.38287 * 120.03570 * 359.74747 * 14 13 11 16 16 Cl 1.73603 * 119.99788 * 179.97438 * 15 14 13 17 17 C 1.38375 * 120.01668 * 264.11931 * 10 9 7 18 18 F 1.35099 * 120.01966 * 359.97438 * 17 10 9 19 19 C 1.52995 * 117.50161 * 100.94452 * 9 7 2 20 20 C 1.53001 * 60.00181 * 252.51391 * 19 9 7 21 21 H 0.96996 * 120.00110 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.98931 * 180.27723 * 13 11 10 23 23 H 1.07999 * 119.98262 * 179.72064 * 14 13 11 24 24 H 1.09001 * 117.49622 * 0.02562 * 19 9 7 25 25 H 1.08996 * 117.50145 * 145.02525 * 19 9 7 26 26 H 1.08998 * 117.49767 * 252.50853 * 20 19 9 27 27 H 1.08999 * 117.50014 * 107.49102 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4049 2.0994 1.3961 5 1 3.5895 1.4154 -0.6062 6 1 1.4954 2.6245 -0.7898 7 6 2.0046 -1.1940 -0.0005 8 1 1.4654 -2.1288 -0.0443 9 6 3.5104 -1.1948 0.0599 10 6 4.2101 -1.7042 -1.1737 11 6 4.4363 -0.8540 -2.2427 12 9 4.0301 0.4330 -2.1799 13 6 5.0838 -1.3210 -3.3737 14 6 5.4951 -2.6391 -3.4408 15 6 5.2648 -3.4911 -2.3762 16 17 5.7812 -5.1463 -2.4618 17 6 4.6218 -3.0236 -1.2410 18 9 4.3971 -3.8556 -0.2006 19 6 4.1629 -1.4842 1.4131 20 6 4.1866 -0.0657 0.8402 21 1 -0.4850 0.8400 -0.0004 22 1 5.2642 -0.6564 -4.2057 23 1 5.9962 -3.0037 -4.3253 24 1 3.5031 -1.6745 2.2596 25 1 5.0986 -2.0433 1.4114 26 1 5.1378 0.3083 0.4615 27 1 3.5424 0.6776 1.3098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260249899.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = -43.030398 kcal Electronic energy + Delta-G solvation = -17312.025742 eV Core-core repulsion = 14118.774490 eV Total energy + Delta-G solvation = -3193.251252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.98044 -49.95840 -40.25384 -38.47468 -37.35664 -34.33383 -31.71518 -31.07019 -27.97926 -24.85318 -24.24935 -23.34670 -21.43040 -19.23882 -18.59718 -18.25966 -17.40866 -17.25937 -16.93853 -16.62925 -16.26136 -15.70052 -15.37644 -14.96678 -14.55202 -14.21971 -13.88764 -13.49037 -13.28439 -13.24481 -12.77850 -12.31598 -12.24051 -12.05551 -11.73037 -11.55790 -10.94495 -10.62494 -10.54602 -9.77762 -9.56733 -8.40290 -6.49589 -0.20287 -0.01294 0.92615 1.29324 1.41599 1.53452 2.25000 2.31036 2.79838 2.92251 3.10163 3.36186 3.52729 3.83041 3.96153 4.17901 4.22873 4.53743 4.60225 4.71897 4.85000 4.86538 4.94844 4.96782 5.12910 5.30692 5.53057 5.68387 6.14305 6.55879 7.19450 8.74153 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.029149 B = 0.008625 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.341867 B = 3245.605066 C = 3617.879068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.285 1.285 5 H -0.184 1.184 6 H -0.312 1.312 7 C -0.490 4.490 8 H 0.032 0.968 9 C 0.012 3.988 10 C -0.104 4.104 11 C 0.113 3.887 12 F -0.128 7.128 13 C -0.137 4.137 14 C -0.054 4.054 15 C -0.088 4.088 16 Cl -0.043 7.043 17 C 0.118 3.882 18 F -0.130 7.130 19 C -0.165 4.165 20 C -0.184 4.184 21 H 0.268 0.732 22 H 0.186 0.814 23 H 0.193 0.807 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.702 -3.335 -7.854 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.213 1.213 5 H -0.106 1.106 6 H -0.242 1.242 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.011 3.989 10 C -0.107 4.107 11 C 0.093 3.907 12 F -0.106 7.106 13 C -0.156 4.156 14 C -0.072 4.072 15 C -0.116 4.116 16 Cl -0.014 7.014 17 C 0.097 3.903 18 F -0.108 7.108 19 C -0.202 4.202 20 C -0.220 4.220 21 H 0.077 0.923 22 H 0.203 0.797 23 H 0.210 0.790 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.566 -3.396 -7.818 17.747 hybrid contribution -0.909 0.537 0.759 1.300 sum 14.657 -2.859 -7.060 16.518 Atomic orbital electron populations 1.70022 1.08443 1.28428 1.51066 1.25958 0.95413 1.03073 0.92955 0.86541 0.82713 0.77461 0.77377 1.21349 1.10638 1.24197 1.20270 0.88211 0.92974 1.51278 0.95007 1.17801 0.92092 1.01257 0.87725 1.19718 0.99855 0.92683 0.98395 1.17728 0.98486 0.79389 0.95052 1.91595 1.88262 1.34470 1.96279 1.21510 0.99489 0.97243 0.97324 1.21119 0.97771 0.90776 0.97503 1.21095 1.05661 0.88859 0.95953 1.98365 1.89049 1.15712 1.98263 1.17083 1.00579 0.87230 0.85388 1.91492 1.92656 1.70313 1.56327 1.23081 1.01751 0.97668 0.97742 1.23048 1.01805 0.91967 1.05148 0.92267 0.79676 0.79035 0.89901 0.88215 0.87221 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.96 21.45 0.30 -59.37 15 2 C 0.02 1.45 5.47 84.65 0.46 1.92 15 3 Si 0.93 44.63 22.99 68.60 1.58 46.20 15 4 H -0.29 -13.34 6.84 99.48 0.68 -12.66 15 5 H -0.18 -7.76 3.25 99.48 0.32 -7.44 15 6 H -0.31 -15.32 7.11 99.48 0.71 -14.62 15 7 C -0.49 -28.53 9.57 25.60 0.24 -28.29 15 8 H 0.03 2.10 8.06 -2.91 -0.02 2.07 15 9 C 0.01 0.56 1.11 -53.68 -0.06 0.50 15 10 C -0.10 -4.18 5.00 -19.78 -0.10 -4.28 15 11 C 0.11 3.95 7.19 22.37 0.16 4.11 15 12 F -0.13 -4.90 12.71 44.97 0.57 -4.33 15 13 C -0.14 -3.28 10.02 22.32 0.22 -3.05 15 14 C -0.05 -1.14 9.83 22.28 0.22 -0.92 15 15 C -0.09 -2.47 6.33 22.37 0.14 -2.33 15 16 Cl -0.04 -1.06 28.62 -2.72 -0.08 -1.14 15 17 C 0.12 4.27 7.08 22.39 0.16 4.43 15 18 F -0.13 -5.09 15.29 44.97 0.69 -4.40 15 19 C -0.17 -6.81 8.98 30.59 0.27 -6.53 15 20 C -0.18 -7.58 6.41 30.60 0.20 -7.39 15 21 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 22 H 0.19 2.94 8.06 -2.91 -0.02 2.91 15 23 H 0.19 2.36 8.06 -2.91 -0.02 2.33 15 24 H 0.08 3.56 8.14 -2.39 -0.02 3.54 15 25 H 0.10 3.59 7.77 -2.39 -0.02 3.57 15 26 H 0.11 3.89 8.12 -2.39 -0.02 3.87 15 27 H 0.08 3.37 3.83 -2.39 -0.01 3.36 15 Total: -1.00 -68.52 248.08 5.78 -62.74 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 0.80 Total: 2.13 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 1.92 Total: -41.84 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 1.26 Total: -8.73 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.58 Total: 46.20 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -68.52 5.78 -62.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249899.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.707 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds