Wall clock time and date at job start Mon Mar 30 2020 06:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48494 * 109.47355 * 265.15386 * 3 2 1 5 5 H 1.48506 * 109.47290 * 25.15542 * 3 2 1 6 6 H 1.48511 * 109.47197 * 145.15296 * 3 2 1 7 7 C 1.37880 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99657 * 348.88184 * 7 2 1 9 9 C 1.50699 * 119.99888 * 168.87483 * 7 2 1 10 10 C 1.50700 * 115.54717 * 89.35272 * 9 7 2 11 11 C 1.38210 * 119.96638 * 234.35025 * 10 9 7 12 12 C 1.38457 * 120.03643 * 179.72561 * 11 10 9 13 13 F 1.35098 * 120.01575 * 180.24927 * 12 11 10 14 14 C 1.38508 * 119.96354 * 0.54906 * 12 11 10 15 15 Cl 1.73602 * 120.03780 * 179.70478 * 14 12 11 16 16 C 1.38520 * 119.93032 * 359.72590 * 14 12 11 17 17 F 1.35090 * 120.01955 * 179.97438 * 16 14 12 18 18 C 1.38222 * 119.96519 * 54.62565 * 10 9 7 19 19 C 1.52995 * 117.50007 * 235.02032 * 9 7 2 20 20 C 1.52999 * 117.50311 * 303.68171 * 9 7 2 21 21 H 0.96992 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.98414 * 359.97438 * 11 10 9 23 23 H 1.08005 * 119.97948 * 0.02562 * 18 10 9 24 24 H 1.08996 * 117.50085 * 215.00581 * 19 9 7 25 25 H 1.09004 * 117.49980 * 0.02562 * 19 9 7 26 26 H 1.09005 * 117.49671 * 359.97438 * 20 9 7 27 27 H 1.08997 * 117.50042 * 144.97453 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5990 1.9874 -1.3950 5 1 1.3990 2.6801 0.5952 6 1 3.4918 1.4720 0.8000 7 6 2.0047 -1.1940 0.0005 8 1 1.4799 -2.1205 0.1813 9 6 3.4904 -1.2063 -0.2513 10 6 4.3582 -1.0645 0.9726 11 6 5.3164 -0.0700 1.0280 12 6 6.1106 0.0652 2.1541 13 9 7.0437 1.0406 2.2098 14 6 5.9523 -0.8041 3.2207 15 17 6.9523 -0.6411 4.6304 16 6 4.9954 -1.8039 3.1613 17 9 4.8397 -2.6530 4.2004 18 6 4.1989 -1.9327 2.0362 19 6 4.0075 -2.0941 -1.3849 20 6 3.9921 -0.5724 -1.5503 21 1 -0.4849 0.8400 -0.0004 22 1 5.4430 0.6047 0.1941 23 1 3.4530 -2.7124 1.9894 24 1 4.9754 -2.5756 -1.2456 25 1 3.2730 -2.6691 -1.9489 26 1 3.2475 -0.1469 -2.2230 27 1 4.9496 -0.0526 -1.5196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260287060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:46 Heat of formation + Delta-G solvation = -46.929508 kcal Electronic energy + Delta-G solvation = -16851.769512 eV Core-core repulsion = 13658.349182 eV Total energy + Delta-G solvation = -3193.420330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.85304 -48.77336 -39.19625 -36.84709 -35.87200 -32.31176 -30.19255 -30.01322 -26.07679 -23.24788 -22.98614 -21.50017 -19.71489 -17.75918 -17.05330 -16.59080 -16.15297 -15.94864 -15.37706 -15.13077 -14.94452 -14.51999 -14.15457 -13.05438 -12.85864 -12.62773 -12.48876 -12.09194 -11.83039 -11.62664 -11.29133 -10.91428 -10.82099 -10.57461 -10.27282 -9.94509 -9.58326 -8.91663 -8.75800 -8.47463 -8.17314 -6.31475 -4.35880 1.12296 1.20504 2.05663 3.18823 3.29554 3.32594 3.58086 3.91673 4.27636 4.45924 4.76690 4.83197 4.94843 5.10976 5.48935 5.71779 5.82340 5.89108 5.91429 5.95304 6.20862 6.31810 6.50702 6.67737 6.81842 6.94043 7.02706 7.48409 8.25546 8.71039 9.30515 10.78756 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.007961 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.507813 B = 3516.436234 C = 3707.088211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.087 3.913 3 Si 0.863 3.137 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.021 3.979 10 C 0.045 3.955 11 C -0.159 4.159 12 C 0.131 3.869 13 F -0.128 7.128 14 C -0.137 4.137 15 Cl -0.051 7.051 16 C 0.132 3.868 17 F -0.126 7.126 18 C -0.130 4.130 19 C -0.162 4.162 20 C -0.195 4.195 21 H 0.269 0.731 22 H 0.144 0.856 23 H 0.155 0.845 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 -1.150 2.957 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.689 3.311 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.020 3.980 10 C 0.044 3.956 11 C -0.178 4.178 12 C 0.111 3.889 13 F -0.106 7.106 14 C -0.165 4.165 15 Cl -0.022 7.022 16 C 0.112 3.888 17 F -0.104 7.104 18 C -0.149 4.149 19 C -0.200 4.200 20 C -0.232 4.232 21 H 0.079 0.921 22 H 0.162 0.838 23 H 0.172 0.828 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.142 -1.013 3.134 11.619 hybrid contribution 0.544 1.154 0.445 1.351 sum 11.686 0.141 3.579 12.223 Atomic orbital electron populations 1.69891 1.06482 1.27677 1.47800 1.24961 0.94530 0.99140 0.93199 0.87085 0.81281 0.83354 0.79333 1.19675 1.21758 1.17319 1.20120 0.86377 0.95325 1.50898 0.89827 1.18227 0.94421 1.01982 0.83395 1.19769 0.89518 0.89881 0.96393 1.21200 0.97131 1.01820 0.97698 1.17021 0.90289 0.87636 0.93970 1.91508 1.62776 1.59767 1.96580 1.20729 1.01496 1.02207 0.92081 1.98350 1.67858 1.97481 1.38541 1.17089 0.96315 0.89277 0.86124 1.91516 1.94661 1.68312 1.55911 1.21042 1.00056 1.02600 0.91220 1.22909 1.00969 0.92699 1.03379 1.23104 1.01406 0.95850 1.02816 0.92134 0.83802 0.82778 0.90506 0.88672 0.88638 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.96 55.43 0.77 -24.34 15 2 C 0.09 2.29 5.45 -17.82 -0.10 2.19 15 3 Si 0.86 19.85 25.46 -169.99 -4.33 15.52 15 4 H -0.27 -6.04 7.08 56.52 0.40 -5.64 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.25 -5.39 4.72 56.52 0.27 -5.12 15 7 C -0.49 -12.31 9.11 -34.44 -0.31 -12.62 15 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 15 9 C 0.02 0.43 1.11 -156.82 -0.17 0.25 15 10 C 0.05 0.86 4.64 -104.64 -0.49 0.38 15 11 C -0.16 -2.84 7.37 -39.51 -0.29 -3.14 15 12 C 0.13 2.26 7.27 -39.40 -0.29 1.97 15 13 F -0.13 -2.12 16.84 2.25 0.04 -2.08 15 14 C -0.14 -2.32 6.33 -39.38 -0.25 -2.57 15 15 Cl -0.05 -0.78 28.28 -51.86 -1.47 -2.24 15 16 C 0.13 2.27 7.27 -39.40 -0.29 1.99 15 17 F -0.13 -2.09 16.84 2.25 0.04 -2.05 15 18 C -0.13 -2.35 9.43 -39.51 -0.37 -2.72 15 19 C -0.16 -2.89 9.94 -26.70 -0.27 -3.15 15 20 C -0.19 -3.64 7.37 -26.70 -0.20 -3.84 15 21 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.14 2.42 6.27 -52.48 -0.33 2.09 15 23 H 0.15 2.70 8.06 -52.48 -0.42 2.28 15 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.09 1.70 8.14 -51.93 -0.42 1.27 15 26 H 0.10 1.90 7.58 -51.93 -0.39 1.51 15 27 H 0.08 1.27 6.56 -51.93 -0.34 0.93 15 LS Contribution 256.70 15.07 3.87 3.87 Total: -1.00 -26.15 256.70 -6.12 -32.27 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -2.02 Total: 0.32 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.02 Total: -21.25 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.77 Total: -24.34 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.33 Total: 15.52 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.47 Total: -2.24 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.15 -6.12 -32.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.663 kcal (2) G-P(sol) polarization free energy of solvation -26.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds