Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47217 * 2 1 4 4 N 1.46500 * 109.47179 * 179.97438 * 3 2 1 5 5 N 1.39875 * 125.67484 * 90.02524 * 4 3 2 6 6 C 1.30307 * 109.27635 * 179.97438 * 5 4 3 7 7 C 1.41881 * 108.07505 * 359.97438 * 6 5 4 8 8 C 1.41520 * 126.56985 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99636 * 180.02562 * 8 7 6 10 10 C 1.39677 * 120.00150 * 0.04293 * 8 7 6 11 11 N 1.31046 * 120.00056 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99996 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47440 * 60.00258 * 12 10 8 14 14 H 1.48498 * 109.47054 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47414 * 300.00152 * 12 10 8 16 16 C 1.34585 * 125.68192 * 269.99856 * 4 3 2 17 17 Br 1.89101 * 126.42547 * 0.02562 * 16 4 3 18 18 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46844 * 299.99698 * 1 2 3 20 20 H 1.08993 * 109.46997 * 60.00045 * 1 2 3 21 21 H 1.09006 * 109.46760 * 239.99816 * 2 1 3 22 22 H 1.08998 * 109.46910 * 120.00435 * 2 1 3 23 23 H 1.09004 * 109.47292 * 59.99681 * 3 2 1 24 24 H 1.09005 * 109.47241 * 300.00251 * 3 2 1 25 25 H 1.07996 * 125.96286 * 180.02562 * 6 5 4 26 26 H 0.96994 * 120.00239 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3213 1.4427 -1.1353 6 6 5.5712 1.4432 -0.7669 7 6 5.6121 1.4437 0.6513 8 6 6.7725 1.4438 1.4614 9 1 6.6799 1.4439 2.5375 10 6 8.0376 1.4442 0.8693 11 7 8.1500 1.4450 -0.4363 12 14 9.5692 1.4436 1.9386 13 1 9.5745 0.2306 2.7952 14 1 10.7765 1.4448 1.0739 15 1 9.5744 2.6555 2.7967 16 6 4.2896 1.4426 1.0941 17 35 3.7079 1.4422 2.8934 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 6.4266 1.4439 -1.4260 26 1 9.0284 1.4449 -0.8475 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260299672.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = 56.447306 kcal Electronic energy + Delta-G solvation = -12010.893263 eV Core-core repulsion = 9750.908268 eV Total energy + Delta-G solvation = -2259.984995 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.33049 -34.88350 -33.37133 -30.80549 -30.10296 -28.25083 -25.88674 -24.18746 -21.44524 -19.74335 -18.92158 -17.15877 -15.18407 -14.90975 -14.61003 -14.02326 -13.21478 -12.85706 -12.55351 -11.94206 -11.72899 -11.43759 -11.22741 -11.05891 -10.95829 -10.64023 -10.47426 -10.19870 -9.96066 -9.35176 -9.31814 -8.92046 -7.77882 -7.26883 -6.58733 -4.13565 2.70486 2.91750 3.15305 3.19389 3.26924 3.97534 4.05780 4.26013 5.17166 5.24364 5.44880 5.49776 5.61760 5.85429 5.97112 6.12049 6.29140 6.52947 6.73146 7.12596 7.20250 7.48115 7.99040 8.30913 8.54230 8.83241 9.01604 9.30689 10.39559 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.030467 B = 0.008930 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.805206 B = 3134.609808 C = 3914.796617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.382 5.382 5 N -0.310 5.310 6 C 0.029 3.971 7 C 0.028 3.972 8 C -0.427 4.427 9 H 0.078 0.922 10 C 0.070 3.930 11 N -0.831 5.831 12 Si 0.919 3.081 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.267 1.267 16 C -0.103 4.103 17 Br -0.047 7.047 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.208 0.792 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -0.788 3.552 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.024 3.976 4 N -0.174 5.174 5 N -0.133 5.133 6 C -0.160 4.160 7 C 0.016 3.984 8 C -0.461 4.461 9 H 0.096 0.904 10 C -0.143 4.143 11 N -0.461 5.461 12 Si 0.744 3.256 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.192 1.192 16 C -0.300 4.300 17 Br 0.034 6.966 18 H 0.073 0.927 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.224 0.776 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.063 -0.775 3.098 9.609 hybrid contribution 1.333 -0.030 0.802 1.556 sum -7.730 -0.805 3.900 8.696 Atomic orbital electron populations 1.21688 0.95450 1.01610 1.01641 1.21954 0.95428 0.97524 1.03041 1.21251 0.77111 0.96813 1.02397 1.47325 1.03869 1.63969 1.02246 1.76599 1.03752 1.24604 1.08296 1.25056 0.93192 1.01462 0.96331 1.17970 0.89581 0.98592 0.92247 1.18868 0.88816 1.44194 0.94196 0.90360 1.25731 1.00666 0.92722 0.95154 1.69444 1.25688 1.40779 1.10219 0.86186 0.79653 0.79674 0.80049 1.19210 1.20555 1.19213 1.22040 0.92443 1.31906 0.83616 1.96281 1.89979 1.98625 1.11742 0.92664 0.92702 0.92740 0.91517 0.91530 0.90623 0.90495 0.77619 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.36 15 2 C -0.14 -2.21 6.26 -26.73 -0.17 -2.38 15 3 C 0.15 2.64 6.22 -4.05 -0.03 2.62 15 4 N -0.38 -8.84 3.58 -58.60 -0.21 -9.05 15 5 N -0.31 -7.82 12.46 30.97 0.39 -7.44 15 6 C 0.03 0.76 10.91 -16.81 -0.18 0.58 15 7 C 0.03 0.76 5.94 -106.80 -0.63 0.13 15 8 C -0.43 -11.44 9.21 -37.79 -0.35 -11.79 15 9 H 0.08 2.05 7.65 -52.48 -0.40 1.64 15 10 C 0.07 1.77 5.49 -17.35 -0.10 1.67 15 11 N -0.83 -21.21 10.32 55.53 0.57 -20.64 15 12 Si 0.92 19.23 29.56 -169.99 -5.02 14.21 15 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 16 C -0.10 -2.53 7.47 -15.89 -0.12 -2.65 15 17 Br -0.05 -0.96 32.96 -68.01 -2.24 -3.21 15 18 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.08 1.27 7.63 -51.93 -0.40 0.87 15 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.21 5.50 5.77 -52.49 -0.30 5.20 15 26 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -27.75 249.83 -6.73 -34.48 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -2.77 Total: 1.06 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.20 Total: -13.18 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.75 Total: -37.12 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -2.24 Total: -3.21 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.75 -6.73 -34.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299672.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.926 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds