Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34349 * 125.79314 * 2 1 4 4 C 1.34304 * 109.47812 * 180.15577 * 3 2 1 5 5 C 1.50700 * 125.77841 * 179.83079 * 4 3 2 6 6 C 1.50702 * 109.46869 * 269.68796 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34509 * 108.44089 * 359.56214 * 4 3 2 15 15 C 1.50699 * 126.58103 * 180.26023 * 14 4 3 16 16 C 1.34565 * 125.79739 * 179.67286 * 2 1 3 17 17 Br 1.89099 * 126.58604 * 359.97438 * 16 2 1 18 18 H 1.09000 * 109.46702 * 270.33162 * 1 2 3 19 19 H 1.08999 * 109.46963 * 30.32781 * 1 2 3 20 20 H 1.08998 * 109.46765 * 150.32855 * 1 2 3 21 21 H 1.09004 * 109.47210 * 149.69089 * 5 4 3 22 22 H 1.08994 * 109.47551 * 29.68742 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.46577 * 90.00197 * 15 14 4 25 25 H 1.08993 * 109.47433 * 210.00243 * 15 14 4 26 26 H 1.08997 * 109.46968 * 330.00942 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2928 1.0898 0.0000 4 6 3.5818 0.7125 -0.0034 5 6 4.7708 1.6383 -0.0082 6 6 5.1676 1.9391 -1.4306 7 1 4.6138 1.5037 -2.2493 8 6 6.2337 2.7751 -1.6869 9 7 6.9077 3.3056 -0.6900 10 14 6.7206 3.1539 -3.4501 11 1 5.5816 3.8002 -4.1502 12 1 7.8893 4.0701 -3.4548 13 1 7.0785 1.8923 -4.1469 14 6 3.6317 -0.6317 0.0041 15 6 4.8744 -1.4842 0.0090 16 6 2.2942 -1.0914 0.0062 17 35 1.7219 -2.8937 0.0172 18 1 -0.3633 0.0059 1.0277 19 1 -0.3633 0.8870 -0.5189 20 1 -0.3633 -0.8929 -0.5087 21 1 5.6042 1.1622 0.5085 22 1 4.5106 2.5666 0.5004 23 1 7.6580 3.8934 -0.8704 24 1 5.1737 -1.6840 1.0380 25 1 4.6706 -2.4264 -0.4996 26 1 5.6776 -0.9587 -0.5074 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -8.579753 kcal Electronic energy + Delta-G solvation = -11985.132878 eV Core-core repulsion = 9690.035348 eV Total energy + Delta-G solvation = -2295.097531 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.04930 -34.07636 -33.50842 -32.18288 -30.08340 -29.09971 -27.23021 -24.97976 -22.34221 -20.39240 -18.81566 -16.62533 -15.72455 -15.49543 -14.56003 -13.66650 -13.34324 -12.93166 -12.49742 -12.44846 -12.18985 -12.10402 -11.84379 -11.35507 -11.13456 -10.98091 -10.80510 -10.66212 -10.07785 -9.77880 -9.59989 -8.67005 -8.53060 -7.46791 -6.14769 -4.20294 2.01120 2.19146 3.03456 3.28357 3.32282 3.36447 3.58224 4.37298 5.05603 5.20357 5.39805 5.52019 5.59391 5.79524 5.96762 6.13521 6.27329 6.52398 6.57539 6.77735 7.04372 7.19698 7.34449 7.79412 7.91289 8.11499 8.82198 9.44051 10.94423 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.006263 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.086743 B = 4469.336644 C = 4708.303096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.009 4.009 3 O -0.163 6.163 4 C 0.061 3.939 5 C 0.089 3.911 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.892 5.892 10 Si 0.901 3.099 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.274 1.274 14 C -0.193 4.193 15 C -0.075 4.075 16 C -0.170 4.170 17 Br -0.039 7.039 18 H 0.079 0.921 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.265 0.735 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -10.647 2.283 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 O -0.059 6.059 4 C 0.010 3.990 5 C 0.052 3.948 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.728 3.272 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.195 4.195 15 C -0.132 4.132 16 C -0.250 4.250 17 Br 0.045 6.955 18 H 0.097 0.903 19 H 0.096 0.904 20 H 0.104 0.896 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.699 -10.888 2.331 15.442 hybrid contribution 0.446 0.467 -0.947 1.146 sum -10.253 -10.422 1.384 14.685 Atomic orbital electron populations 1.20267 0.85338 1.03889 1.03278 1.21998 0.93784 0.83733 1.06704 1.84109 1.17413 1.33342 1.71045 1.23614 0.82629 0.94604 0.98112 1.18064 0.85297 0.92516 0.98919 1.20931 1.14682 1.29212 0.90888 0.92248 1.24968 0.95956 0.95385 0.97672 1.69932 1.20410 1.31673 1.30998 0.86508 0.78036 0.78392 0.84284 1.20066 1.21084 1.19985 1.19813 0.93621 0.93544 1.12511 1.20090 0.94067 0.97720 1.01334 1.21673 0.95620 0.90209 1.17523 1.96457 1.89633 1.11207 1.98187 0.90260 0.90415 0.89647 0.92565 0.94322 0.92488 0.92408 0.92444 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.22 36.01 0.37 -0.55 15 2 C -0.01 -0.17 7.32 -35.60 -0.26 -0.43 15 3 O -0.16 -3.53 10.65 5.58 0.06 -3.47 15 4 C 0.06 1.40 6.51 -35.63 -0.23 1.17 15 5 C 0.09 2.27 5.13 -29.03 -0.15 2.12 15 6 C -0.52 -14.35 9.09 -34.44 -0.31 -14.67 15 7 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 9 N -0.89 -25.56 13.29 55.43 0.74 -24.83 15 10 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 13 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 14 C -0.19 -4.00 6.17 -104.72 -0.65 -4.65 15 15 C -0.08 -1.39 9.88 36.01 0.36 -1.04 15 16 C -0.17 -3.15 6.59 -39.66 -0.26 -3.41 15 17 Br -0.04 -0.58 33.28 -68.01 -2.26 -2.84 15 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.08 0.98 7.75 -51.93 -0.40 0.58 15 21 H 0.06 1.46 7.76 -51.93 -0.40 1.05 15 22 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 25 H 0.06 0.96 8.05 -51.93 -0.42 0.54 15 26 H 0.08 1.57 7.78 -51.93 -0.40 1.16 15 LS Contribution 254.40 15.07 3.83 3.83 Total: -1.00 -28.84 254.40 -6.75 -35.59 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -2.86 Total: -4.64 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.24 Total: -19.83 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.74 Total: -24.83 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.06 Total: -3.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.26 Total: -2.84 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.84 -6.75 -35.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.007 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds