Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34349 * 125.79314 * 2 1 4 4 C 1.34304 * 109.47812 * 180.15577 * 3 2 1 5 5 C 1.50700 * 125.77841 * 179.83079 * 4 3 2 6 6 C 1.50702 * 109.46869 * 269.68796 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34509 * 108.44089 * 359.56214 * 4 3 2 15 15 C 1.50699 * 126.58103 * 180.26023 * 14 4 3 16 16 C 1.34565 * 125.79739 * 179.67286 * 2 1 3 17 17 Br 1.89099 * 126.58604 * 359.97438 * 16 2 1 18 18 H 1.09000 * 109.46702 * 270.33162 * 1 2 3 19 19 H 1.08999 * 109.46963 * 30.32781 * 1 2 3 20 20 H 1.08998 * 109.46765 * 150.32855 * 1 2 3 21 21 H 1.09004 * 109.47210 * 149.69089 * 5 4 3 22 22 H 1.08994 * 109.47551 * 29.68742 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.46577 * 90.00197 * 15 14 4 25 25 H 1.08993 * 109.47433 * 210.00243 * 15 14 4 26 26 H 1.08997 * 109.46968 * 330.00942 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2928 1.0898 0.0000 4 6 3.5818 0.7125 -0.0034 5 6 4.7708 1.6383 -0.0082 6 6 5.1676 1.9391 -1.4306 7 1 4.6138 1.5037 -2.2493 8 6 6.2337 2.7751 -1.6869 9 7 6.9077 3.3056 -0.6900 10 14 6.7206 3.1539 -3.4501 11 1 5.5816 3.8002 -4.1502 12 1 7.8893 4.0701 -3.4548 13 1 7.0785 1.8923 -4.1469 14 6 3.6317 -0.6317 0.0041 15 6 4.8744 -1.4842 0.0090 16 6 2.2942 -1.0914 0.0062 17 35 1.7219 -2.8937 0.0172 18 1 -0.3633 0.0059 1.0277 19 1 -0.3633 0.8870 -0.5189 20 1 -0.3633 -0.8929 -0.5087 21 1 5.6042 1.1622 0.5085 22 1 4.5106 2.5666 0.5004 23 1 7.6580 3.8934 -0.8704 24 1 5.1737 -1.6840 1.0380 25 1 4.6706 -2.4264 -0.4996 26 1 5.6776 -0.9587 -0.5074 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310983.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -24.434639 kcal Electronic energy + Delta-G solvation = -11985.820398 eV Core-core repulsion = 9690.035348 eV Total energy + Delta-G solvation = -2295.785050 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.000 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.61665 -35.89580 -35.16248 -33.82783 -31.37399 -30.92771 -28.66847 -26.79767 -24.15566 -21.92329 -20.37983 -18.69220 -17.34514 -17.17935 -16.42011 -15.13337 -14.86464 -14.43970 -14.05274 -13.92422 -13.73483 -13.62337 -13.30135 -13.16225 -12.82750 -12.62311 -12.42235 -12.28771 -11.86695 -11.67514 -11.18825 -10.65348 -10.11756 -9.07253 -8.24720 -6.40127 0.62305 0.69146 1.37881 1.42609 1.44547 1.52265 2.07200 2.39662 3.06144 3.70551 3.90034 4.22142 4.49106 4.57869 4.64860 4.78003 4.81477 5.01761 5.06405 5.14397 5.22794 5.32237 5.56844 5.64440 6.03054 6.25339 6.67232 7.28466 8.83189 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.006263 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.086743 B = 4469.336644 C = 4708.303096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.003 3.997 3 O -0.183 6.183 4 C 0.014 3.986 5 C 0.100 3.900 6 C -0.537 4.537 7 H 0.052 0.948 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.967 3.033 11 H -0.270 1.270 12 H -0.277 1.277 13 H -0.266 1.266 14 C -0.186 4.186 15 C -0.074 4.074 16 C -0.192 4.192 17 Br 0.001 6.999 18 H 0.104 0.896 19 H 0.090 0.910 20 H 0.105 0.895 21 H 0.042 0.958 22 H 0.012 0.988 23 H 0.270 0.730 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 -11.960 1.494 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.050 4.050 3 O -0.081 6.081 4 C -0.036 4.036 5 C 0.063 3.937 6 C -0.575 4.575 7 H 0.070 0.930 8 C -0.185 4.185 9 N -0.562 5.562 10 Si 0.791 3.209 11 H -0.195 1.195 12 H -0.202 1.202 13 H -0.191 1.191 14 C -0.188 4.188 15 C -0.130 4.130 16 C -0.273 4.273 17 Br 0.085 6.915 18 H 0.122 0.878 19 H 0.109 0.891 20 H 0.123 0.877 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.003 -12.212 1.548 17.193 hybrid contribution 0.738 0.775 -0.645 1.249 sum -11.265 -11.437 0.903 16.078 Atomic orbital electron populations 1.20568 0.81415 1.05482 1.05326 1.23082 0.95754 0.82700 1.03441 1.84055 1.17210 1.35135 1.71688 1.23075 0.82731 0.95039 1.02725 1.17667 0.86519 0.91851 0.97638 1.21184 1.15027 1.29584 0.91672 0.93019 1.25831 0.95716 0.94964 1.02007 1.70038 1.20860 1.32158 1.33174 0.85470 0.77906 0.78515 0.79027 1.19544 1.20153 1.19124 1.20153 0.95509 0.92965 1.10208 1.20123 0.92670 0.97894 1.02335 1.21887 0.94617 0.92639 1.18126 1.96476 1.89051 1.07804 1.98143 0.87800 0.89132 0.87685 0.93965 0.97007 0.92155 0.90824 0.90453 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.22 71.24 0.73 -0.90 15 2 C 0.00 0.10 7.32 24.85 0.18 0.28 15 3 O -0.18 -8.05 10.65 -2.94 -0.03 -8.08 15 4 C 0.01 0.67 6.51 24.83 0.16 0.84 15 5 C 0.10 5.39 5.13 29.10 0.15 5.54 15 6 C -0.54 -30.62 9.09 25.60 0.23 -30.39 15 7 H 0.05 2.95 7.74 -2.91 -0.02 2.93 15 8 C 0.01 0.80 5.46 84.66 0.46 1.26 15 9 N -0.92 -54.12 13.29 21.45 0.28 -53.83 15 10 Si 0.97 43.65 29.54 68.60 2.03 45.67 15 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 14 C -0.19 -7.70 6.17 -19.93 -0.12 -7.82 15 15 C -0.07 -2.69 9.88 71.24 0.70 -1.99 15 16 C -0.19 -6.83 6.59 22.22 0.15 -6.69 15 17 Br 0.00 0.04 33.28 -20.37 -0.68 -0.64 15 18 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 19 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 20 H 0.10 2.00 7.75 -2.39 -0.02 1.98 15 21 H 0.04 2.32 7.76 -2.38 -0.02 2.30 15 22 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 23 H 0.27 14.79 8.31 -92.70 -0.77 14.02 15 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.08 2.47 8.05 -2.39 -0.02 2.45 15 26 H 0.06 2.38 7.78 -2.39 -0.02 2.36 15 Total: -1.00 -62.74 254.40 5.42 -57.32 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.18 Total: -0.57 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 2.64 Total: -39.87 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.28 Total: -53.83 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.03 Total: -8.08 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.68 Total: -0.64 kcal Total: -62.74 5.42 -57.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310983.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.883 kcal (2) G-P(sol) polarization free energy of solvation -62.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds