Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 C 1.39866 * 125.89056 * 325.00083 * 12 2 1 14 14 C 1.35425 * 107.90391 * 179.97438 * 13 12 2 15 15 Br 1.89102 * 126.13616 * 180.02562 * 14 13 12 16 16 N 1.34980 * 107.72510 * 0.02562 * 14 13 12 17 17 C 1.46493 * 126.04043 * 179.97438 * 16 14 13 18 18 N 1.30835 * 125.88991 * 144.69444 * 12 2 1 19 19 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 23 23 H 1.07995 * 126.04283 * 359.97438 * 13 12 2 24 24 H 1.09002 * 109.47359 * 89.99852 * 17 16 14 25 25 H 1.09001 * 109.47770 * 209.99702 * 17 16 14 26 26 H 1.09002 * 109.47033 * 330.00204 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 6 2.0324 -0.7104 -1.2304 13 6 1.4307 -1.8145 -1.8429 14 6 2.1828 -2.1565 -2.9160 15 35 1.8372 -3.5801 -4.1118 16 7 3.2233 -1.2990 -2.9787 17 6 4.2867 -1.3063 -3.9862 18 7 3.1037 -0.3973 -1.9132 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7086 1.1614 3.4844 23 1 0.5263 -2.3070 -1.5176 24 1 3.9949 -0.6773 -4.8272 25 1 5.2067 -0.9211 -3.5464 26 1 4.4499 -2.3262 -4.3348 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260370107.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = 72.845506 kcal Electronic energy + Delta-G solvation = -12009.427294 eV Core-core repulsion = 9750.153379 eV Total energy + Delta-G solvation = -2259.273915 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.62331 -34.78159 -32.56871 -31.69109 -30.17635 -28.57910 -25.84125 -25.12116 -22.01355 -20.10478 -18.75415 -16.56037 -16.08409 -15.14921 -14.64331 -13.63563 -13.58627 -12.91777 -12.56716 -12.31902 -12.04650 -11.45843 -11.03205 -10.91909 -10.69330 -10.67087 -10.36814 -10.21429 -9.92489 -9.61146 -9.16593 -8.38441 -8.33942 -7.98085 -6.00452 -4.06404 1.38413 2.12754 3.02988 3.31643 3.38590 3.42523 3.53899 4.46405 4.82955 5.27980 5.30843 5.49799 5.64429 5.93254 6.24036 6.46157 6.87348 6.97575 7.12762 7.22998 7.42429 7.67073 7.83555 8.08199 8.34157 8.42503 8.94510 9.57527 11.05802 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.006095 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.041982 B = 4593.078094 C = 4694.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.111 3.889 3 H 0.045 0.955 4 C -0.502 4.502 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.130 3.870 13 C -0.211 4.211 14 C 0.054 3.946 15 Br -0.006 7.006 16 N -0.378 5.378 17 C 0.102 3.898 18 N -0.285 5.285 19 H 0.032 0.968 20 H 0.090 0.910 21 H 0.011 0.989 22 H 0.261 0.739 23 H 0.152 0.848 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -7.777 -14.202 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 H 0.063 0.937 4 C -0.541 4.541 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.037 4.037 13 C -0.243 4.243 14 C -0.150 4.150 15 Br 0.075 6.925 16 N -0.162 5.162 17 C -0.040 4.040 18 N -0.107 5.107 19 H 0.051 0.949 20 H 0.108 0.892 21 H 0.030 0.970 22 H 0.071 0.929 23 H 0.170 0.830 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.806 -7.397 -14.746 16.734 hybrid contribution -0.185 -0.814 1.019 1.317 sum 2.620 -8.211 -13.727 16.209 Atomic orbital electron populations 1.21775 0.96904 0.99673 1.00612 1.17434 0.92809 0.95311 0.85421 0.93717 1.20971 1.31255 1.12387 0.89501 0.92522 1.24905 0.95032 0.94989 0.98866 1.69888 1.36700 1.22806 1.23442 0.86466 0.78647 0.79673 0.82833 1.19807 1.20990 1.20921 1.23387 0.90428 0.93898 0.95980 1.21349 1.04053 1.02187 0.96747 1.22678 0.95785 0.96270 1.00312 1.96641 1.94846 1.41520 1.59447 1.48586 1.19871 1.23810 1.23933 1.21763 0.89599 1.03067 0.89537 1.77554 1.21507 1.12829 0.98849 0.94863 0.89167 0.96987 0.92894 0.83041 0.91102 0.89173 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.56 37.16 0.32 -2.82 15 2 C 0.11 2.86 2.76 -92.92 -0.26 2.60 15 3 H 0.04 1.25 8.14 -51.93 -0.42 0.83 15 4 C -0.50 -13.95 8.55 -34.44 -0.29 -14.24 15 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 15 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 15 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 15 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 C 0.13 3.03 6.06 -82.41 -0.50 2.53 15 13 C -0.21 -4.31 9.94 -39.98 -0.40 -4.71 15 14 C 0.05 0.97 7.34 -17.17 -0.13 0.84 15 15 Br -0.01 -0.08 33.37 -68.01 -2.27 -2.35 15 16 N -0.38 -6.92 4.01 -66.36 -0.27 -7.19 15 17 C 0.10 1.30 11.28 59.84 0.67 1.97 15 18 N -0.29 -6.43 12.57 33.67 0.42 -6.01 15 19 H 0.03 0.74 7.30 -51.93 -0.38 0.36 15 20 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15 22 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 23 H 0.15 2.90 7.42 -52.49 -0.39 2.51 15 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.08 0.85 7.66 -51.93 -0.40 0.45 15 LS Contribution 249.00 15.07 3.75 3.75 Total: -1.00 -29.80 249.00 -6.14 -35.94 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -2.71 Total: -3.84 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.68 Total: -12.18 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.78 Total: -37.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.27 Total: -2.35 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.80 -6.14 -35.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370107.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.784 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds