Wall clock time and date at job start Mon Mar 30 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47076 * 274.97798 * 3 2 1 5 5 H 1.48495 * 109.47473 * 34.98109 * 3 2 1 6 6 H 1.48502 * 109.47219 * 154.98015 * 3 2 1 7 7 C 1.37878 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 186.46036 * 7 2 1 9 9 C 1.50704 * 120.00085 * 6.45878 * 7 2 1 10 10 C 1.52999 * 109.47223 * 177.04510 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47298 * 0.02562 * 11 10 9 13 13 Br 1.96607 * 109.47286 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.46966 * 60.00101 * 12 11 10 15 15 C 1.52996 * 109.47536 * 299.99897 * 14 12 11 16 16 C 1.52997 * 109.47198 * 300.00036 * 12 11 10 17 17 C 1.52995 * 109.47074 * 297.04745 * 9 7 2 18 18 H 0.97000 * 119.99605 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46883 * 60.00122 * 10 9 7 20 20 H 1.08998 * 109.47427 * 300.00204 * 10 9 7 21 21 H 1.09003 * 109.47351 * 240.00124 * 11 10 9 22 22 H 1.08998 * 109.47319 * 120.00535 * 11 10 9 23 23 H 1.09001 * 109.47400 * 60.00359 * 14 12 11 24 24 H 1.09002 * 109.47224 * 179.97438 * 14 12 11 25 25 H 1.08995 * 109.47789 * 240.00185 * 15 14 12 26 26 H 1.09001 * 109.47569 * 119.99804 * 15 14 12 27 27 H 1.08998 * 109.47498 * 179.97438 * 16 12 11 28 28 H 1.08999 * 109.47274 * 300.00086 * 16 12 11 29 29 H 1.08993 * 109.47435 * 299.99514 * 17 9 7 30 30 H 1.09001 * 109.47344 * 60.00113 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5033 2.6200 0.8026 6 1 3.5954 1.4120 0.5921 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1971 0.1058 9 6 1.2582 -2.4951 -0.1457 10 6 2.2564 -3.6538 -0.1877 11 6 1.4987 -4.9746 -0.3368 12 6 -0.0047 -4.6964 -0.3948 13 35 -0.9784 -6.3937 -0.5856 14 6 -0.3106 -3.7949 -1.5925 15 6 0.4470 -2.4741 -1.4435 16 6 -0.4444 -3.9989 0.8939 17 6 0.3142 -2.6781 1.0443 18 1 -0.4849 0.8401 -0.0004 19 1 2.8349 -3.6687 0.7360 20 1 2.9289 -3.5235 -1.0355 21 1 1.7170 -5.6171 0.5163 22 1 1.8116 -5.4714 -1.2552 23 1 0.0026 -4.2919 -2.5107 24 1 -1.3817 -3.5971 -1.6342 25 1 -0.2640 -1.6486 -1.4141 26 1 1.1202 -2.3437 -2.2909 27 1 -1.5153 -3.8002 0.8525 28 1 -0.2264 -4.6411 1.7473 29 1 0.8926 -2.6930 1.9680 30 1 -0.3970 -1.8526 1.0743 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260522942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:45 Heat of formation + Delta-G solvation = -24.951138 kcal Electronic energy + Delta-G solvation = -13200.816438 eV Core-core repulsion = 11040.842085 eV Total energy + Delta-G solvation = -2159.974353 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 258.031 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.44647 -33.36892 -30.82406 -29.94060 -29.89230 -28.24537 -24.54913 -21.83811 -21.62136 -20.31102 -16.91255 -15.18677 -15.10459 -14.89316 -14.48306 -14.08202 -12.15122 -12.14481 -11.62214 -11.51017 -11.43085 -11.37165 -11.18180 -11.03770 -10.85947 -10.67138 -10.05053 -9.90915 -9.48706 -9.42612 -9.33072 -8.90307 -8.77617 -8.49770 -8.28274 -6.00827 -4.10148 2.25783 3.27034 3.35248 3.37937 4.39238 5.10703 5.14704 5.28085 5.62485 5.95547 6.03906 6.19023 6.21181 6.28169 6.35038 6.39841 6.52502 6.54657 6.73467 6.77114 7.04795 7.14371 7.15896 7.44761 7.67483 7.72682 8.01239 8.15724 8.43437 8.90568 9.54995 10.99585 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.061139 B = 0.007163 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.865023 B = 3908.193140 C = 4011.840907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.074 3.926 10 C -0.102 4.102 11 C -0.104 4.104 12 C 0.014 3.986 13 Br -0.212 7.212 14 C -0.105 4.105 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.103 4.103 18 H 0.260 0.740 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -9.446 -0.953 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.074 3.926 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.061 4.061 13 Br -0.131 7.131 14 C -0.144 4.144 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.142 4.142 18 H 0.070 0.930 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.051 -9.913 -1.015 10.174 hybrid contribution 0.602 1.111 0.004 1.263 sum -1.450 -8.803 -1.011 8.978 Atomic orbital electron populations 1.69797 1.05736 1.26241 1.50580 1.24918 0.94829 0.98892 0.94891 0.86638 0.80012 0.83760 0.77938 1.20808 1.21334 1.19998 1.21123 0.93329 0.90259 1.49715 0.92612 1.18022 0.91247 0.92012 0.91327 1.21662 0.98343 0.93517 1.00524 1.21800 0.91767 0.99362 1.01327 1.24199 0.95161 0.85943 1.00773 1.97241 1.79331 1.37793 1.98737 1.21877 1.00959 0.97203 0.94316 1.21655 0.99565 0.94614 0.98345 1.21905 1.00536 0.98632 0.93365 1.21710 0.99601 0.94371 0.98499 0.92999 0.92952 0.92929 0.92264 0.92277 0.92903 0.92335 0.88615 0.94225 0.92348 0.92939 0.94268 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 9.40 55.43 0.52 -22.69 16 2 C 0.07 1.70 5.12 -17.82 -0.09 1.61 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 8 H 0.06 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.07 1.68 0.49 -155.63 -0.08 1.60 16 10 C -0.10 -2.03 4.93 -26.73 -0.13 -2.16 16 11 C -0.10 -1.83 5.05 -26.73 -0.13 -1.96 16 12 C 0.01 0.26 1.02 -90.63 -0.09 0.17 16 13 Br -0.21 -3.47 32.79 -68.01 -2.23 -5.70 16 14 C -0.11 -2.00 5.05 -26.74 -0.13 -2.13 16 15 C -0.10 -2.28 4.74 -26.70 -0.13 -2.40 16 16 C -0.11 -2.01 5.05 -26.71 -0.13 -2.15 16 17 C -0.10 -2.28 4.80 -26.71 -0.13 -2.41 16 18 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 19 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 20 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.10 2.36 6.10 -51.93 -0.32 2.04 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 LS Contribution 246.95 15.07 3.72 3.72 Total: -1.00 -24.73 246.95 -8.74 -33.46 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.40 Total: -1.08 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.33 Total: -23.04 kcal Atomic # 7 Polarization: -23.21 SS G_CDS: 0.52 Total: -22.69 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 35 Polarization: -3.47 SS G_CDS: -2.23 Total: -5.70 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -24.73 -8.74 -33.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.512 kcal (2) G-P(sol) polarization free energy of solvation -24.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds