Wall clock time and date at job start Mon Mar 30 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47076 * 274.97798 * 3 2 1 5 5 H 1.48495 * 109.47473 * 34.98109 * 3 2 1 6 6 H 1.48502 * 109.47219 * 154.98015 * 3 2 1 7 7 C 1.37878 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 186.46036 * 7 2 1 9 9 C 1.50704 * 120.00085 * 6.45878 * 7 2 1 10 10 C 1.52999 * 109.47223 * 177.04510 * 9 7 2 11 11 C 1.52996 * 109.47016 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47298 * 0.02562 * 11 10 9 13 13 Br 1.96607 * 109.47286 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.46966 * 60.00101 * 12 11 10 15 15 C 1.52996 * 109.47536 * 299.99897 * 14 12 11 16 16 C 1.52997 * 109.47198 * 300.00036 * 12 11 10 17 17 C 1.52995 * 109.47074 * 297.04745 * 9 7 2 18 18 H 0.97000 * 119.99605 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46883 * 60.00122 * 10 9 7 20 20 H 1.08998 * 109.47427 * 300.00204 * 10 9 7 21 21 H 1.09003 * 109.47351 * 240.00124 * 11 10 9 22 22 H 1.08998 * 109.47319 * 120.00535 * 11 10 9 23 23 H 1.09001 * 109.47400 * 60.00359 * 14 12 11 24 24 H 1.09002 * 109.47224 * 179.97438 * 14 12 11 25 25 H 1.08995 * 109.47789 * 240.00185 * 15 14 12 26 26 H 1.09001 * 109.47569 * 119.99804 * 15 14 12 27 27 H 1.08998 * 109.47498 * 179.97438 * 16 12 11 28 28 H 1.08999 * 109.47274 * 300.00086 * 16 12 11 29 29 H 1.08993 * 109.47435 * 299.99514 * 17 9 7 30 30 H 1.09001 * 109.47344 * 60.00113 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5033 2.6200 0.8026 6 1 3.5954 1.4120 0.5921 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1971 0.1058 9 6 1.2582 -2.4951 -0.1457 10 6 2.2564 -3.6538 -0.1877 11 6 1.4987 -4.9746 -0.3368 12 6 -0.0047 -4.6964 -0.3948 13 35 -0.9784 -6.3937 -0.5856 14 6 -0.3106 -3.7949 -1.5925 15 6 0.4470 -2.4741 -1.4435 16 6 -0.4444 -3.9989 0.8939 17 6 0.3142 -2.6781 1.0443 18 1 -0.4849 0.8401 -0.0004 19 1 2.8349 -3.6687 0.7360 20 1 2.9289 -3.5235 -1.0355 21 1 1.7170 -5.6171 0.5163 22 1 1.8116 -5.4714 -1.2552 23 1 0.0026 -4.2919 -2.5107 24 1 -1.3817 -3.5971 -1.6342 25 1 -0.2640 -1.6486 -1.4141 26 1 1.1202 -2.3437 -2.2909 27 1 -1.5153 -3.8002 0.8525 28 1 -0.2264 -4.6411 1.7473 29 1 0.8926 -2.6930 1.9680 30 1 -0.3970 -1.8526 1.0743 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260522942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:45 Heat of formation + Delta-G solvation = -35.653164 kcal Electronic energy + Delta-G solvation = -13201.280512 eV Core-core repulsion = 11040.842085 eV Total energy + Delta-G solvation = -2160.438427 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 258.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06066 -35.19490 -32.49869 -31.54155 -31.51137 -29.79413 -26.44139 -23.40046 -23.28551 -21.96450 -18.74867 -16.91960 -16.81460 -16.42628 -16.20149 -15.80817 -13.95453 -13.71289 -13.33517 -13.17304 -13.05274 -12.98331 -12.75163 -12.64367 -12.62684 -12.47210 -11.80093 -11.67324 -11.15933 -10.95276 -10.75664 -10.50164 -10.44936 -10.24274 -10.14916 -7.96409 -6.11602 0.81157 1.42370 1.46421 1.53483 2.47811 3.23709 3.66092 3.67196 4.12443 4.50617 4.53662 4.64049 4.65100 4.70987 4.73931 4.77406 4.89837 4.98943 5.17914 5.22403 5.40907 5.47991 5.48569 5.67153 5.76095 5.87375 6.22760 6.32752 6.52039 6.95753 7.55274 9.00825 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.061139 B = 0.007163 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.865023 B = 3908.193140 C = 4011.840907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.046 0.954 9 C 0.064 3.936 10 C -0.098 4.098 11 C -0.097 4.097 12 C 0.012 3.988 13 Br -0.183 7.183 14 C -0.098 4.098 15 C -0.097 4.097 16 C -0.099 4.099 17 C -0.097 4.097 18 H 0.257 0.743 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -10.966 -1.147 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.065 0.935 9 C 0.063 3.937 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.063 4.063 13 Br -0.102 7.102 14 C -0.137 4.137 15 C -0.136 4.136 16 C -0.137 4.137 17 C -0.136 4.136 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.894 -11.444 -1.210 11.663 hybrid contribution 0.534 1.576 0.068 1.665 sum -1.360 -9.868 -1.142 10.027 Atomic orbital electron populations 1.69933 1.06521 1.26460 1.51065 1.25492 0.95505 1.01323 0.95019 0.85845 0.78984 0.80835 0.77724 1.20705 1.21358 1.19839 1.21460 0.93170 0.92028 1.49563 0.93549 1.18098 0.91898 0.91994 0.91675 1.21552 0.97829 0.93823 1.00449 1.21753 0.90836 0.98105 1.02886 1.24035 0.95892 0.86970 0.99437 1.97254 1.78797 1.35450 1.98675 1.21761 1.00367 0.95862 0.95664 1.21469 0.98870 0.95542 0.97762 1.21783 0.99908 0.97251 0.94776 1.21514 0.98950 0.95279 0.97903 0.93290 0.93115 0.93022 0.90692 0.90665 0.91248 0.92433 0.91671 0.95052 0.92457 0.91330 0.95191 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.29 9.40 21.45 0.20 -48.08 16 2 C 0.03 1.35 5.12 84.65 0.43 1.79 16 3 Si 0.94 42.19 29.54 68.60 2.03 44.21 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.52 -27.09 8.01 25.60 0.20 -26.89 16 8 H 0.05 2.42 7.75 -2.91 -0.02 2.39 16 9 C 0.06 2.87 0.49 -52.91 -0.03 2.85 16 10 C -0.10 -3.76 4.93 30.59 0.15 -3.61 16 11 C -0.10 -3.14 5.05 30.59 0.15 -2.98 16 12 C 0.01 0.42 1.02 -10.80 -0.01 0.41 16 13 Br -0.18 -5.39 32.79 -20.37 -0.67 -6.06 16 14 C -0.10 -3.56 5.05 30.59 0.15 -3.41 16 15 C -0.10 -4.30 4.74 30.61 0.15 -4.16 16 16 C -0.10 -3.60 5.05 30.61 0.15 -3.44 16 17 C -0.10 -4.32 4.80 30.61 0.15 -4.17 16 18 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 3.28 6.10 -2.39 -0.01 3.26 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 Total: -1.00 -51.82 246.95 4.17 -47.64 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.10 Total: 5.90 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 1.51 Total: -43.62 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.20 Total: -48.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 35 Polarization: -5.39 SS G_CDS: -0.67 Total: -6.06 kcal Total: -51.82 4.17 -47.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.991 kcal (2) G-P(sol) polarization free energy of solvation -51.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds