Wall clock time and date at job start Mon Mar 30 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86809 * 119.99949 * 2 1 4 4 H 1.48491 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46874 * 299.99913 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99712 * 3 2 1 7 7 C 1.40468 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.38531 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.38772 * 119.99865 * 217.06044 * 9 7 2 11 11 C 1.40487 * 120.00159 * 7.53317 * 10 9 7 12 12 C 1.37809 * 125.37764 * 186.52854 * 11 10 9 13 13 C 1.36967 * 114.27147 * 179.78965 * 12 11 10 14 14 C 1.34501 * 115.28301 * 0.50881 * 13 12 11 15 15 Br 1.89103 * 124.95880 * 179.70423 * 14 13 12 16 16 S 1.75805 * 110.08560 * 359.71924 * 14 13 12 17 17 H 0.97004 * 119.99887 * 0.02562 * 1 2 3 18 18 H 1.07995 * 119.99992 * 37.32444 * 9 7 2 19 19 H 1.07997 * 119.99600 * 187.53356 * 10 9 7 20 20 H 1.07997 * 122.86539 * 0.02562 * 12 11 10 21 21 H 1.07995 * 122.35609 * 180.20395 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8820 2.3966 1.2125 7 6 2.0092 -1.2165 0.0005 8 1 3.0892 -1.2165 0.0010 9 6 1.3166 -2.4162 0.0005 10 6 1.8000 -3.4964 0.7253 11 6 2.9003 -3.3310 1.5830 12 6 3.5486 -4.3454 2.2538 13 6 4.5985 -3.9274 3.0277 14 6 4.8250 -2.6016 3.0211 15 35 6.1931 -1.7313 3.9941 16 16 3.6632 -1.7958 1.9763 17 1 -0.4850 0.8401 -0.0004 18 1 0.4027 -2.5122 -0.5669 19 1 1.3303 -4.4642 0.6298 20 1 3.2562 -5.3819 2.1730 21 1 5.1990 -4.6136 3.6064 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260616448.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:15 Heat of formation + Delta-G solvation = 19.168041 kcal Electronic energy + Delta-G solvation = -9673.711629 eV Core-core repulsion = 7686.737110 eV Total energy + Delta-G solvation = -1986.974519 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 257.941 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.50557 -35.03982 -32.34990 -30.29624 -27.53976 -24.99200 -22.50324 -19.95460 -18.63281 -16.89546 -15.80933 -14.77518 -14.34233 -13.27623 -12.92948 -12.49804 -12.04028 -11.75499 -11.63382 -11.43904 -10.84116 -10.58897 -10.26187 -10.00875 -9.83383 -9.58843 -9.09238 -8.58324 -7.41598 -7.29075 -6.81809 -4.78414 1.76772 2.38716 2.73171 2.85746 2.94631 3.19759 3.31417 3.31603 3.61168 4.12184 4.80741 6.15124 6.52196 6.56431 6.64572 6.96598 7.07755 7.18415 7.41455 7.67717 7.81054 8.00088 8.30507 8.43313 9.57017 Molecular weight = 257.94amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.009013 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.386045 B = 3105.793146 C = 4005.641998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.080 3.920 3 Si 0.906 3.094 4 H -0.244 1.244 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.109 0.891 9 C 0.086 3.914 10 C -0.339 4.339 11 C 0.006 3.994 12 C -0.298 4.298 13 C -0.046 4.046 14 C -0.350 4.350 15 Br -0.063 7.063 16 S 0.162 5.838 17 H 0.296 0.704 18 H 0.087 0.913 19 H 0.098 0.902 20 H 0.117 0.883 21 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 1.290 2.932 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.166 1.166 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.126 0.874 9 C 0.061 3.939 10 C -0.365 4.365 11 C -0.114 4.114 12 C -0.324 4.324 13 C -0.078 4.078 14 C -0.542 4.542 15 Br 0.020 6.980 16 S 0.429 5.571 17 H 0.107 0.893 18 H 0.105 0.895 19 H 0.116 0.884 20 H 0.135 0.865 21 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.833 3.183 3.041 7.308 hybrid contribution 0.140 -1.146 0.306 1.195 sum 5.973 2.036 3.347 7.143 Atomic orbital electron populations 1.69556 1.08148 1.31439 1.29781 1.26303 0.94941 1.02346 0.90954 0.86193 0.82056 0.79409 0.79587 1.16607 1.18880 1.18556 1.19942 0.96087 0.91550 1.38077 0.87390 1.20778 0.93664 0.91491 0.87987 1.19942 1.05899 0.99909 1.10763 1.22351 0.96760 0.94554 0.97693 1.19929 1.03568 0.98583 1.10279 1.19460 0.97202 0.92887 0.98252 1.26393 1.08142 0.99497 1.20154 1.96315 1.49016 1.79198 1.73493 1.84967 1.25279 1.08691 1.38191 0.89305 0.89486 0.88382 0.86462 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.40 13.16 55.58 0.73 -16.67 14 2 C 0.08 1.77 5.50 -17.20 -0.09 1.68 14 3 Si 0.91 16.92 29.57 -169.99 -5.03 11.89 14 4 H -0.24 -4.58 7.11 56.52 0.40 -4.18 14 5 H -0.26 -4.70 7.11 56.52 0.40 -4.30 14 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 7 C -0.42 -9.93 6.49 -38.63 -0.25 -10.18 14 8 H 0.11 2.55 5.42 -32.41 -0.18 2.38 14 9 C 0.09 2.05 9.18 -39.28 -0.36 1.68 14 10 C -0.34 -8.01 10.00 -38.54 -0.39 -8.40 14 11 C 0.01 0.13 6.10 -38.89 -0.24 -0.10 14 12 C -0.30 -6.67 10.18 -40.20 -0.41 -7.08 14 13 C -0.05 -0.99 10.06 -41.36 -0.42 -1.40 14 14 C -0.35 -7.61 6.97 29.41 0.21 -7.41 14 15 Br -0.06 -1.17 34.07 -68.01 -2.32 -3.49 14 16 S 0.16 3.70 18.53 -107.50 -1.99 1.70 14 17 H 0.30 5.97 8.29 -40.82 -0.34 5.63 14 18 H 0.09 2.04 7.93 -52.49 -0.42 1.62 14 19 H 0.10 2.18 8.06 -52.49 -0.42 1.76 14 20 H 0.12 2.42 8.06 -52.49 -0.42 2.00 14 21 H 0.11 2.10 8.06 -52.49 -0.42 1.67 14 LS Contribution 226.95 15.07 3.42 3.42 Total: -1.00 -24.07 226.95 -8.13 -32.20 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -0.99 Total: 2.15 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -1.95 Total: -31.21 kcal Atomic # 7 Polarization: -17.40 SS G_CDS: 0.73 Total: -16.67 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.99 Total: 1.70 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -2.32 Total: -3.49 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -24.07 -8.13 -32.20 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616448.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.368 kcal (2) G-P(sol) polarization free energy of solvation -24.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds