Wall clock time and date at job start Mon Mar 30 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86809 * 119.99949 * 2 1 4 4 H 1.48491 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46874 * 299.99913 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99712 * 3 2 1 7 7 C 1.40468 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.38531 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.38772 * 119.99865 * 217.06044 * 9 7 2 11 11 C 1.40487 * 120.00159 * 7.53317 * 10 9 7 12 12 C 1.37809 * 125.37764 * 186.52854 * 11 10 9 13 13 C 1.36967 * 114.27147 * 179.78965 * 12 11 10 14 14 C 1.34501 * 115.28301 * 0.50881 * 13 12 11 15 15 Br 1.89103 * 124.95880 * 179.70423 * 14 13 12 16 16 S 1.75805 * 110.08560 * 359.71924 * 14 13 12 17 17 H 0.97004 * 119.99887 * 0.02562 * 1 2 3 18 18 H 1.07995 * 119.99992 * 37.32444 * 9 7 2 19 19 H 1.07997 * 119.99600 * 187.53356 * 10 9 7 20 20 H 1.07997 * 122.86539 * 0.02562 * 12 11 10 21 21 H 1.07995 * 122.35609 * 180.20395 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8820 2.3966 1.2125 7 6 2.0092 -1.2165 0.0005 8 1 3.0892 -1.2165 0.0010 9 6 1.3166 -2.4162 0.0005 10 6 1.8000 -3.4964 0.7253 11 6 2.9003 -3.3310 1.5830 12 6 3.5486 -4.3454 2.2538 13 6 4.5985 -3.9274 3.0277 14 6 4.8250 -2.6016 3.0211 15 35 6.1931 -1.7313 3.9941 16 16 3.6632 -1.7958 1.9763 17 1 -0.4850 0.8401 -0.0004 18 1 0.4027 -2.5122 -0.5669 19 1 1.3303 -4.4642 0.6298 20 1 3.2562 -5.3819 2.1730 21 1 5.1990 -4.6136 3.6064 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616448.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:15 Heat of formation + Delta-G solvation = 8.446723 kcal Electronic energy + Delta-G solvation = -9674.176541 eV Core-core repulsion = 7686.737110 eV Total energy + Delta-G solvation = -1987.439431 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 257.941 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.24047 -36.77337 -34.08973 -31.94547 -29.28134 -26.74361 -24.24439 -21.71179 -20.38075 -18.64695 -17.51567 -16.46016 -16.02034 -15.02028 -14.54965 -14.23874 -13.75136 -13.42378 -13.28438 -13.03763 -12.38103 -12.31752 -11.89706 -11.68475 -11.48521 -11.25895 -10.75777 -10.30694 -9.10604 -9.05417 -8.58852 -6.56576 0.00747 0.68893 1.18842 1.32706 1.45979 1.51106 1.56760 1.66351 2.08829 2.38581 3.02632 4.47547 4.79670 4.86635 4.90000 5.18502 5.33073 5.41417 5.66575 5.94114 6.03569 6.22912 6.51645 6.64775 7.92605 Molecular weight = 257.94amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.009013 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.386045 B = 3105.793146 C = 4005.641998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.050 3.950 3 Si 0.957 3.043 4 H -0.247 1.247 5 H -0.247 1.247 6 H -0.256 1.256 7 C -0.437 4.437 8 H 0.106 0.894 9 C 0.071 3.929 10 C -0.355 4.355 11 C -0.019 4.019 12 C -0.300 4.300 13 C -0.051 4.051 14 C -0.355 4.355 15 Br -0.030 7.030 16 S 0.147 5.853 17 H 0.308 0.692 18 H 0.081 0.919 19 H 0.103 0.897 20 H 0.131 0.869 21 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 2.002 3.554 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.170 1.170 5 H -0.170 1.170 6 H -0.180 1.180 7 C -0.470 4.470 8 H 0.123 0.877 9 C 0.046 3.954 10 C -0.381 4.381 11 C -0.138 4.138 12 C -0.325 4.325 13 C -0.083 4.083 14 C -0.547 4.547 15 Br 0.052 6.948 16 S 0.414 5.586 17 H 0.119 0.881 18 H 0.099 0.901 19 H 0.121 0.879 20 H 0.149 0.851 21 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.863 3.885 3.650 8.690 hybrid contribution -0.131 -1.411 0.187 1.429 sum 6.733 2.475 3.836 8.134 Atomic orbital electron populations 1.69558 1.09191 1.33014 1.29702 1.26986 0.95522 1.04620 0.90160 0.85457 0.80602 0.76019 0.80398 1.16958 1.17030 1.18011 1.20050 0.96052 0.92133 1.38730 0.87719 1.20839 0.93796 0.92168 0.88566 1.20050 1.06545 1.00209 1.11247 1.22546 0.97436 0.95305 0.98537 1.20228 1.03484 0.99089 1.09736 1.19712 0.97102 0.93270 0.98170 1.26650 1.08487 0.99873 1.19725 1.96335 1.47240 1.78666 1.72519 1.84884 1.25827 1.09009 1.38882 0.88072 0.90110 0.87886 0.85100 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.70 13.16 21.93 0.29 -35.41 14 2 C 0.05 2.21 5.50 85.41 0.47 2.68 14 3 Si 0.96 33.49 29.57 68.60 2.03 35.52 14 4 H -0.25 -8.70 7.11 99.48 0.71 -8.00 14 5 H -0.25 -7.91 7.11 99.48 0.71 -7.21 14 6 H -0.26 -8.72 7.11 99.48 0.71 -8.01 14 7 C -0.44 -20.61 6.49 22.88 0.15 -20.46 14 8 H 0.11 4.97 5.42 -15.67 -0.08 4.89 14 9 C 0.07 3.46 9.18 22.47 0.21 3.67 14 10 C -0.36 -16.98 10.00 22.95 0.23 -16.75 14 11 C -0.02 -0.91 6.10 22.72 0.14 -0.77 14 12 C -0.30 -13.02 10.18 21.87 0.22 -12.80 14 13 C -0.05 -2.07 10.06 21.12 0.21 -1.86 14 14 C -0.36 -14.75 6.97 66.96 0.47 -14.29 14 15 Br -0.03 -1.05 34.07 -20.37 -0.69 -1.75 14 16 S 0.15 6.62 18.53 -56.49 -1.05 5.57 14 17 H 0.31 12.18 8.29 -92.71 -0.77 11.41 14 18 H 0.08 3.90 7.93 -2.91 -0.02 3.88 14 19 H 0.10 4.65 8.06 -2.91 -0.02 4.63 14 20 H 0.13 5.21 8.06 -2.91 -0.02 5.19 14 21 H 0.13 4.73 8.06 -2.91 -0.02 4.71 14 Total: -1.00 -49.01 226.95 3.84 -45.16 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.17 Total: 11.48 kcal Atomic # 6 Polarization: -62.67 SS G_CDS: 2.10 Total: -60.58 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.29 Total: -35.41 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.05 Total: 5.57 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -0.69 Total: -1.75 kcal Total: -49.01 3.84 -45.16 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616448.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.609 kcal (2) G-P(sol) polarization free energy of solvation -49.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds