Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 C 1.50700 * 109.47141 * 119.99983 * 2 1 3 5 5 N 1.30471 * 125.73937 * 299.97069 * 4 2 1 6 6 C 1.34261 * 109.41810 * 180.02562 * 5 4 2 7 7 C 1.34719 * 108.27757 * 0.02562 * 6 5 4 8 8 Br 1.89099 * 126.59305 * 179.97438 * 7 6 5 9 9 N 1.36338 * 125.73987 * 119.99875 * 4 2 1 10 10 C 1.37566 * 126.51865 * 359.97438 * 9 4 2 11 11 H 1.08009 * 119.99695 * 38.27737 * 10 9 4 12 12 C 1.38928 * 120.00298 * 218.27738 * 10 9 4 13 13 N 1.31330 * 120.00128 * 20.86640 * 12 10 9 14 14 Si 1.86805 * 120.00105 * 200.86342 * 12 10 9 15 15 H 1.48501 * 109.46991 * 60.00306 * 14 12 10 16 16 H 1.48500 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47253 * 300.00194 * 14 12 10 18 18 H 1.09004 * 109.47040 * 300.00143 * 1 2 3 19 19 H 1.08999 * 109.47327 * 60.00221 * 1 2 3 20 20 H 1.09007 * 109.47371 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47290 * 239.99451 * 2 1 3 22 22 H 1.08991 * 109.47454 * 59.99860 * 3 2 1 23 23 H 1.09006 * 109.46824 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.46678 * 299.99552 * 3 2 1 25 25 H 1.08008 * 125.86072 * 180.26324 * 6 5 4 26 26 H 0.96997 * 120.00387 * 181.36935 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7875 -0.3633 2.4641 6 6 2.3952 -1.2220 3.2983 7 6 3.0454 -2.1412 2.5585 8 35 4.0717 -3.5904 3.2084 9 7 2.8194 -1.8236 1.2418 10 6 3.2969 -2.4998 0.1430 11 1 3.6187 -1.9519 -0.7304 12 6 3.3652 -3.8873 0.1568 13 7 2.6263 -4.5728 0.9988 14 14 4.5080 -4.7780 -1.0222 15 1 5.9076 -4.3474 -0.7750 16 1 4.3963 -6.2432 -0.8079 17 1 4.1293 -4.4513 -2.4204 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.6766 1.9564 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9562 -0.8900 25 1 2.3645 -1.1848 4.3773 26 1 2.6885 -5.5405 1.0221 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = 41.039280 kcal Electronic energy + Delta-G solvation = -12477.367139 eV Core-core repulsion = 10216.714002 eV Total energy + Delta-G solvation = -2260.653137 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55982 -34.54126 -33.95147 -30.99763 -30.13958 -26.62363 -26.52477 -25.22013 -21.78542 -20.28694 -18.54857 -17.26080 -15.69970 -14.72444 -13.94505 -13.85048 -13.49258 -12.59198 -12.42249 -12.26190 -11.81832 -11.58246 -11.43219 -11.03616 -10.73600 -10.61813 -10.55060 -10.20001 -9.95898 -9.63106 -8.92275 -8.65325 -7.99912 -6.86957 -6.77638 -4.56281 2.83785 2.98564 3.05933 3.08013 3.45744 3.87399 4.29367 4.73620 4.90195 5.48534 5.75157 5.87627 6.05713 6.17159 6.34895 6.45409 6.49375 6.72664 6.78437 6.89606 7.01207 7.09134 7.38876 8.00000 8.12656 8.68691 9.26807 9.47724 10.22600 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.012865 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.102123 B = 2175.951740 C = 3094.794409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.009 3.991 3 C -0.134 4.134 4 C 0.140 3.860 5 N -0.503 5.503 6 C -0.043 4.043 7 C -0.020 4.020 8 Br -0.020 7.020 9 N -0.238 5.238 10 C -0.377 4.377 11 H 0.108 0.892 12 C 0.067 3.933 13 N -0.797 5.797 14 Si 0.921 3.079 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.267 1.267 18 H 0.059 0.941 19 H 0.048 0.952 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.150 0.850 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 1.430 -0.210 2.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 C -0.192 4.192 4 C -0.119 4.119 5 N -0.223 5.223 6 C -0.200 4.200 7 C -0.222 4.222 8 Br 0.063 6.937 9 N 0.097 4.903 10 C -0.506 4.506 11 H 0.125 0.875 12 C -0.150 4.150 13 N -0.424 5.424 14 Si 0.744 3.256 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.192 1.192 18 H 0.078 0.922 19 H 0.067 0.933 20 H 0.071 0.929 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.168 0.832 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.623 1.265 0.144 2.063 hybrid contribution 0.793 -1.179 -0.803 1.632 sum 2.416 0.086 -0.659 2.506 Atomic orbital electron populations 1.21692 0.94629 1.01666 1.00978 1.19150 0.95234 0.94216 0.92530 1.21745 1.00649 0.95626 1.01209 1.22758 1.00482 0.94355 0.94324 1.69890 1.24545 1.28466 0.99401 1.21501 1.04781 0.95583 0.98141 1.22372 1.12309 1.00299 0.87180 1.96296 1.68710 1.45111 1.83619 1.41290 1.27518 1.17492 1.04037 1.19590 1.46099 0.89562 0.95301 0.87463 1.25398 0.95421 0.96599 0.97587 1.70041 1.30374 1.08943 1.33061 0.86078 0.81000 0.78300 0.80178 1.18841 1.20148 1.19158 0.92219 0.93262 0.92924 0.90272 0.92077 0.93282 0.93192 0.83219 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.17 37.15 0.34 -2.01 15 2 C 0.01 0.18 3.26 -91.77 -0.30 -0.12 15 3 C -0.13 -2.28 9.18 37.16 0.34 -1.94 15 4 C 0.14 3.42 6.41 -154.25 -0.99 2.43 15 5 N -0.50 -12.50 11.24 -10.48 -0.12 -12.62 15 6 C -0.04 -1.07 11.82 -17.74 -0.21 -1.27 15 7 C -0.02 -0.52 6.72 -16.34 -0.11 -0.63 15 8 Br -0.02 -0.46 30.63 -68.01 -2.08 -2.55 15 9 N -0.24 -6.25 2.80 -57.11 -0.16 -6.41 15 10 C -0.38 -9.73 9.18 -14.72 -0.14 -9.86 15 11 H 0.11 2.63 7.59 -52.48 -0.40 2.23 15 12 C 0.07 1.66 4.35 -17.51 -0.08 1.58 15 13 N -0.80 -20.62 10.78 55.49 0.60 -20.03 15 14 Si 0.92 19.02 29.60 -169.99 -5.03 13.99 15 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 18 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.08 1.59 7.19 -51.93 -0.37 1.22 15 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 25 H 0.15 3.25 8.06 -52.48 -0.42 2.83 15 26 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 246.47 15.07 3.71 3.71 Total: -1.00 -28.17 246.47 -7.08 -35.25 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -2.87 Total: 0.48 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.14 Total: -11.83 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.32 Total: -39.06 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.08 Total: -2.55 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.17 -7.08 -35.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.292 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds