Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 C 1.50700 * 109.47141 * 119.99983 * 2 1 3 5 5 N 1.30471 * 125.73937 * 299.97069 * 4 2 1 6 6 C 1.34261 * 109.41810 * 180.02562 * 5 4 2 7 7 C 1.34719 * 108.27757 * 0.02562 * 6 5 4 8 8 Br 1.89099 * 126.59305 * 179.97438 * 7 6 5 9 9 N 1.36338 * 125.73987 * 119.99875 * 4 2 1 10 10 C 1.37566 * 126.51865 * 359.97438 * 9 4 2 11 11 H 1.08009 * 119.99695 * 38.27737 * 10 9 4 12 12 C 1.38928 * 120.00298 * 218.27738 * 10 9 4 13 13 N 1.31330 * 120.00128 * 20.86640 * 12 10 9 14 14 Si 1.86805 * 120.00105 * 200.86342 * 12 10 9 15 15 H 1.48501 * 109.46991 * 60.00306 * 14 12 10 16 16 H 1.48500 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47253 * 300.00194 * 14 12 10 18 18 H 1.09004 * 109.47040 * 300.00143 * 1 2 3 19 19 H 1.08999 * 109.47327 * 60.00221 * 1 2 3 20 20 H 1.09007 * 109.47371 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47290 * 239.99451 * 2 1 3 22 22 H 1.08991 * 109.47454 * 59.99860 * 3 2 1 23 23 H 1.09006 * 109.46824 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.46678 * 299.99552 * 3 2 1 25 25 H 1.08008 * 125.86072 * 180.26324 * 6 5 4 26 26 H 0.96997 * 120.00387 * 181.36935 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7875 -0.3633 2.4641 6 6 2.3952 -1.2220 3.2983 7 6 3.0454 -2.1412 2.5585 8 35 4.0717 -3.5904 3.2084 9 7 2.8194 -1.8236 1.2418 10 6 3.2969 -2.4998 0.1430 11 1 3.6187 -1.9519 -0.7304 12 6 3.3652 -3.8873 0.1568 13 7 2.6263 -4.5728 0.9988 14 14 4.5080 -4.7780 -1.0222 15 1 5.9076 -4.3474 -0.7750 16 1 4.3963 -6.2432 -0.8079 17 1 4.1293 -4.4513 -2.4204 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.6766 1.9564 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9562 -0.8900 25 1 2.3645 -1.1848 4.3773 26 1 2.6885 -5.5405 1.0221 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = 25.784947 kcal Electronic energy + Delta-G solvation = -12478.028616 eV Core-core repulsion = 10216.714002 eV Total energy + Delta-G solvation = -2261.314614 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.43330 -36.13772 -35.78416 -32.91318 -31.98283 -28.45879 -27.91906 -27.13390 -23.44207 -22.18919 -20.36055 -19.08481 -17.57060 -16.44839 -15.77586 -15.50406 -15.07609 -14.34934 -14.16802 -13.82995 -13.56959 -13.17299 -12.97953 -12.82399 -12.27278 -12.18517 -12.05985 -11.81420 -11.64856 -11.43950 -10.80547 -10.56232 -9.89416 -8.75676 -8.64148 -6.51100 0.97964 1.28163 1.38887 1.48609 1.63879 2.15767 2.40713 2.86551 3.10537 3.84508 4.20413 4.39286 4.44896 4.80740 4.88448 4.89416 5.04571 5.08136 5.15856 5.18722 5.43937 5.46314 5.55450 6.14478 6.21319 6.79045 7.37376 7.57342 8.37427 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.012865 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.102123 B = 2175.951740 C = 3094.794409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.002 3.998 3 C -0.124 4.124 4 C 0.131 3.869 5 N -0.516 5.516 6 C -0.055 4.055 7 C -0.048 4.048 8 Br -0.002 7.002 9 N -0.258 5.258 10 C -0.402 4.402 11 H 0.112 0.888 12 C 0.035 3.965 13 N -0.828 5.828 14 Si 0.981 3.019 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.254 1.254 18 H 0.054 0.946 19 H 0.088 0.912 20 H 0.029 0.971 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.087 0.913 25 H 0.171 0.829 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 1.695 -1.354 2.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.018 4.018 3 C -0.182 4.182 4 C -0.129 4.129 5 N -0.236 5.236 6 C -0.211 4.211 7 C -0.249 4.249 8 Br 0.081 6.919 9 N 0.076 4.924 10 C -0.530 4.530 11 H 0.129 0.871 12 C -0.179 4.179 13 N -0.456 5.456 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.178 1.178 18 H 0.073 0.927 19 H 0.106 0.894 20 H 0.049 0.951 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.188 0.812 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.822 1.540 -0.992 2.584 hybrid contribution 0.696 -1.231 -0.405 1.471 sum 2.518 0.309 -1.396 2.896 Atomic orbital electron populations 1.21626 0.93049 1.00719 1.02651 1.19419 0.96526 0.95453 0.90397 1.21664 1.00014 0.93754 1.02742 1.23748 0.99531 0.93951 0.95630 1.69906 1.25057 1.28826 0.99824 1.21953 1.04481 0.95407 0.99254 1.22844 1.13161 1.01387 0.87479 1.96255 1.68112 1.44365 1.83198 1.41594 1.28228 1.18196 1.04381 1.19933 1.47024 0.90343 0.95682 0.87058 1.26208 0.96096 0.96738 0.98902 1.70114 1.31466 1.09305 1.34673 0.85170 0.78785 0.77230 0.78667 1.18751 1.19528 1.17842 0.92730 0.89351 0.95129 0.90671 0.92673 0.94198 0.89457 0.81164 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.17 71.98 0.66 -3.52 15 2 C 0.00 0.09 3.26 -11.54 -0.04 0.06 15 3 C -0.12 -3.96 9.18 71.98 0.66 -3.30 15 4 C 0.13 6.38 6.41 137.72 0.88 7.26 15 5 N -0.52 -25.60 11.24 -187.08 -2.10 -27.70 15 6 C -0.05 -2.69 11.82 83.51 0.99 -1.70 15 7 C -0.05 -2.48 6.72 83.02 0.56 -1.92 15 8 Br 0.00 -0.10 30.63 -20.37 -0.62 -0.72 15 9 N -0.26 -13.58 2.80 -334.59 -0.94 -14.52 15 10 C -0.40 -20.65 9.18 83.96 0.77 -19.88 15 11 H 0.11 5.42 7.59 -2.91 -0.02 5.40 15 12 C 0.03 1.69 4.35 84.93 0.37 2.06 15 13 N -0.83 -42.60 10.78 21.65 0.23 -42.36 15 14 Si 0.98 37.97 29.60 68.60 2.03 40.00 15 15 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 16 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 17 H -0.25 -9.29 7.11 99.48 0.71 -8.58 15 18 H 0.05 1.90 8.14 -2.38 -0.02 1.88 15 19 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 20 H 0.03 1.14 8.14 -2.38 -0.02 1.13 15 21 H 0.07 2.95 7.19 -2.39 -0.02 2.93 15 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.04 1.32 8.14 -2.38 -0.02 1.30 15 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.17 7.34 8.06 -2.91 -0.02 7.32 15 26 H 0.29 13.76 8.31 -92.71 -0.77 12.99 15 Total: -1.00 -59.13 246.47 4.62 -54.50 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.17 Total: 11.74 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 4.85 Total: -20.93 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.81 Total: -84.59 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -0.62 Total: -0.72 kcal Total: -59.13 4.62 -54.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.288 kcal (2) G-P(sol) polarization free energy of solvation -59.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds