Wall clock time and date at job start Mon Mar 30 2020 06:45:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.35014 * 126.03123 * 2 1
4 4 C 1.35371 * 107.72793 * 179.97438 * 3 2 1
5 5 Br 1.89100 * 126.04185 * 179.97438 * 4 3 2
6 6 C 1.39918 * 107.90799 * 0.02562 * 4 3 2
7 7 C 1.50697 * 125.89098 * 180.02562 * 6 4 3
8 8 C 1.53002 * 109.47567 * 89.99821 * 7 6 4
9 9 C 1.50697 * 109.47187 * 180.02562 * 8 7 6
10 10 H 1.07997 * 120.00179 * 359.97438 * 9 8 7
11 11 C 1.37881 * 119.99624 * 180.02562 * 9 8 7
12 12 N 1.31513 * 120.00036 * 359.97438 * 11 9 8
13 13 Si 1.86800 * 119.99650 * 179.97438 * 11 9 8
14 14 H 1.48502 * 109.46907 * 90.00090 * 13 11 9
15 15 H 1.48503 * 109.46849 * 209.99556 * 13 11 9
16 16 H 1.48494 * 109.47174 * 329.99750 * 13 11 9
17 17 N 1.30837 * 108.20884 * 359.75425 * 6 4 3
18 18 H 1.09001 * 109.47060 * 90.00473 * 1 2 3
19 19 H 1.09004 * 109.47073 * 209.99961 * 1 2 3
20 20 H 1.09000 * 109.47212 * 330.00044 * 1 2 3
21 21 H 1.07991 * 126.13813 * 359.94167 * 3 2 1
22 22 H 1.09000 * 109.47193 * 210.00516 * 7 6 4
23 23 H 1.09009 * 109.47453 * 329.99571 * 7 6 4
24 24 H 1.09004 * 109.46727 * 300.00431 * 8 7 6
25 25 H 1.08996 * 109.46799 * 59.99791 * 8 7 6
26 26 H 0.97000 * 119.99533 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2592 1.0919 0.0000
4 6 3.5445 0.6667 0.0006
5 35 5.0810 1.7690 0.0002
6 6 3.5348 -0.7324 0.0003
7 6 4.7495 -1.6243 0.0014
8 6 5.1594 -1.9264 1.4442
9 6 6.3745 -2.8177 1.4451
10 1 6.8106 -3.1372 0.5102
11 6 6.9288 -3.2262 2.6396
12 7 6.3975 -2.8376 3.7781
13 14 8.4346 -4.3317 2.6408
14 1 9.6622 -3.4960 2.6425
15 1 8.4180 -5.1894 3.8530
16 1 8.4207 -5.1883 1.4279
17 7 2.2892 -1.1327 0.0050
18 1 -0.3633 -0.0001 -1.0277
19 1 -0.3633 -0.8900 0.5138
20 1 -0.3634 0.8900 0.5138
21 1 1.9286 2.1199 -0.0009
22 1 4.5162 -2.5566 -0.5129
23 1 5.5697 -1.1219 -0.5117
24 1 5.3927 -0.9940 1.9584
25 1 4.3393 -2.4288 1.9572
26 1 6.7877 -3.1247 4.6185
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260726787.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:45:25
Heat of formation + Delta-G solvation = 65.676042 kcal
Electronic energy + Delta-G solvation = -11729.535101 eV
Core-core repulsion = 9469.950294 eV
Total energy + Delta-G solvation = -2259.584807 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 258.006 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-40.94820 -34.53674 -32.86191 -31.36528 -30.56129 -28.79037 -26.55173 -24.50514
-21.41940 -20.82566 -19.10983 -16.73381 -16.14777 -15.35852 -14.40535 -14.13193
-13.69453 -13.05440 -12.84073 -12.38985 -12.35309 -11.97425 -11.06336 -10.90686
-10.63546 -10.59042 -10.55389 -9.76311 -9.75808 -9.61105 -9.04482 -8.76655
-8.26612 -8.04651 -5.91879 -3.94103 1.95894 2.02948 2.89357 2.97647
3.38280 3.43990 3.47809 4.52684 4.65290 4.82260 5.08842 5.27167
5.36650 5.44210 5.67204 5.84893 6.52558 6.60199 6.76176 7.04327
7.13938 7.76858 7.83435 8.02589 8.08298 8.47602 9.12163 9.68988
11.19586
Molecular weight = 258.01amu
Principal moments of inertia in cm(-1)
A = 0.025082 B = 0.007206 C = 0.005949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1116.072322 B = 3884.496834 C = 4705.373796
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.106 3.894
2 N -0.380 5.380
3 C 0.082 3.918
4 C -0.234 4.234
5 Br -0.024 7.024
6 C 0.131 3.869
7 C -0.044 4.044
8 C 0.034 3.966
9 C -0.517 4.517
10 H 0.057 0.943
11 C 0.058 3.942
12 N -0.895 5.895
13 Si 0.892 3.108
14 H -0.280 1.280
15 H -0.287 1.287
16 H -0.274 1.274
17 N -0.292 5.292
18 H 0.073 0.927
19 H 0.090 0.910
20 H 0.085 0.915
21 H 0.177 0.823
22 H 0.068 0.932
23 H 0.076 0.924
24 H 0.023 0.977
25 H 0.017 0.983
26 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.549 11.452 -8.420 17.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.036 4.036
2 N -0.161 5.161
3 C -0.068 4.068
4 C -0.325 4.325
5 Br 0.059 6.941
6 C -0.037 4.037
7 C -0.083 4.083
8 C -0.004 4.004
9 C -0.556 4.556
10 H 0.075 0.925
11 C -0.143 4.143
12 N -0.534 5.534
13 Si 0.720 3.280
14 H -0.207 1.207
15 H -0.213 1.213
16 H -0.198 1.198
17 N -0.113 5.113
18 H 0.091 0.909
19 H 0.109 0.891
20 H 0.103 0.897
21 H 0.194 0.806
22 H 0.087 0.913
23 H 0.095 0.905
24 H 0.041 0.959
25 H 0.035 0.965
26 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -9.975 10.826 -8.232 16.866
hybrid contribution 0.823 0.004 0.197 0.846
sum -9.152 10.829 -8.036 16.297
Atomic orbital electron populations
1.21817 0.74163 1.04490 1.03115 1.48478 1.06539 1.03949 1.57117
1.22250 0.89841 0.93657 1.01032 1.21764 0.92151 0.94466 1.24162
1.96552 1.34878 1.64313 1.98353 1.22898 0.94269 0.92246 0.94300
1.20457 0.89172 0.95793 1.02893 1.19015 0.96214 0.97083 0.88078
1.21193 1.12113 1.29858 0.92405 0.92454 1.24995 0.97277 0.96414
0.95629 1.69981 1.40679 1.45492 0.97229 0.86599 0.83324 0.80658
0.77453 1.20659 1.21334 1.19840 1.77538 1.00929 1.06572 1.26300
0.90888 0.89137 0.89677 0.80570 0.91315 0.90535 0.95902 0.96470
0.93076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 0.98 11.47 59.85 0.69 1.66 15
2 N -0.38 -5.74 4.01 -68.13 -0.27 -6.02 15
3 C 0.08 1.18 11.46 -17.17 -0.20 0.98 15
4 C -0.23 -4.16 6.52 -39.98 -0.26 -4.43 15
5 Br -0.02 -0.39 33.62 -68.01 -2.29 -2.68 15
6 C 0.13 2.68 6.47 -82.39 -0.53 2.15 15
7 C -0.04 -0.98 5.54 -27.88 -0.15 -1.13 15
8 C 0.03 0.93 4.95 -27.88 -0.14 0.79 15
9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 15
10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15
11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15
12 N -0.89 -27.53 13.29 55.43 0.74 -26.79 15
13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 15
14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15
15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15
16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15
17 N -0.29 -5.77 12.57 33.68 0.42 -5.34 15
18 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15
19 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15
20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15
21 H 0.18 1.76 8.06 -52.49 -0.42 1.34 15
22 H 0.07 1.51 8.14 -51.93 -0.42 1.08 15
23 H 0.08 1.64 7.87 -51.92 -0.41 1.23 15
24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15
25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15
26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15
LS Contribution 256.17 15.07 3.86 3.86
Total: -1.00 -33.38 256.17 -6.48 -39.86
By element:
Atomic # 1 Polarization: -3.37 SS G_CDS: -2.91 Total: -6.27 kcal
Atomic # 6 Polarization: -12.61 SS G_CDS: -1.01 Total: -13.62 kcal
Atomic # 7 Polarization: -39.04 SS G_CDS: 0.89 Total: -38.15 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Atomic # 35 Polarization: -0.39 SS G_CDS: -2.29 Total: -2.68 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -33.38 -6.48 -39.86 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260726787.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.536 kcal
(2) G-P(sol) polarization free energy of solvation -33.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.676 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds