Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35014 * 126.03123 * 2 1 4 4 C 1.35371 * 107.72793 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 126.04185 * 179.97438 * 4 3 2 6 6 C 1.39918 * 107.90799 * 0.02562 * 4 3 2 7 7 C 1.50697 * 125.89098 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47567 * 89.99821 * 7 6 4 9 9 C 1.50697 * 109.47187 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99624 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00036 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99650 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46907 * 90.00090 * 13 11 9 15 15 H 1.48503 * 109.46849 * 209.99556 * 13 11 9 16 16 H 1.48494 * 109.47174 * 329.99750 * 13 11 9 17 17 N 1.30837 * 108.20884 * 359.75425 * 6 4 3 18 18 H 1.09001 * 109.47060 * 90.00473 * 1 2 3 19 19 H 1.09004 * 109.47073 * 209.99961 * 1 2 3 20 20 H 1.09000 * 109.47212 * 330.00044 * 1 2 3 21 21 H 1.07991 * 126.13813 * 359.94167 * 3 2 1 22 22 H 1.09000 * 109.47193 * 210.00516 * 7 6 4 23 23 H 1.09009 * 109.47453 * 329.99571 * 7 6 4 24 24 H 1.09004 * 109.46727 * 300.00431 * 8 7 6 25 25 H 1.08996 * 109.46799 * 59.99791 * 8 7 6 26 26 H 0.97000 * 119.99533 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2592 1.0919 0.0000 4 6 3.5445 0.6667 0.0006 5 35 5.0810 1.7690 0.0002 6 6 3.5348 -0.7324 0.0003 7 6 4.7495 -1.6243 0.0014 8 6 5.1594 -1.9264 1.4442 9 6 6.3745 -2.8177 1.4451 10 1 6.8106 -3.1372 0.5102 11 6 6.9288 -3.2262 2.6396 12 7 6.3975 -2.8376 3.7781 13 14 8.4346 -4.3317 2.6408 14 1 9.6622 -3.4960 2.6425 15 1 8.4180 -5.1894 3.8530 16 1 8.4207 -5.1883 1.4279 17 7 2.2892 -1.1327 0.0050 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 1.9286 2.1199 -0.0009 22 1 4.5162 -2.5566 -0.5129 23 1 5.5697 -1.1219 -0.5117 24 1 5.3927 -0.9940 1.9584 25 1 4.3393 -2.4288 1.9572 26 1 6.7877 -3.1247 4.6185 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726787.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = 65.676042 kcal Electronic energy + Delta-G solvation = -11729.535101 eV Core-core repulsion = 9469.950294 eV Total energy + Delta-G solvation = -2259.584807 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.94820 -34.53674 -32.86191 -31.36528 -30.56129 -28.79037 -26.55173 -24.50514 -21.41940 -20.82566 -19.10983 -16.73381 -16.14777 -15.35852 -14.40535 -14.13193 -13.69453 -13.05440 -12.84073 -12.38985 -12.35309 -11.97425 -11.06336 -10.90686 -10.63546 -10.59042 -10.55389 -9.76311 -9.75808 -9.61105 -9.04482 -8.76655 -8.26612 -8.04651 -5.91879 -3.94103 1.95894 2.02948 2.89357 2.97647 3.38280 3.43990 3.47809 4.52684 4.65290 4.82260 5.08842 5.27167 5.36650 5.44210 5.67204 5.84893 6.52558 6.60199 6.76176 7.04327 7.13938 7.76858 7.83435 8.02589 8.08298 8.47602 9.12163 9.68988 11.19586 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.007206 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.072322 B = 3884.496834 C = 4705.373796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.380 5.380 3 C 0.082 3.918 4 C -0.234 4.234 5 Br -0.024 7.024 6 C 0.131 3.869 7 C -0.044 4.044 8 C 0.034 3.966 9 C -0.517 4.517 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 N -0.292 5.292 18 H 0.073 0.927 19 H 0.090 0.910 20 H 0.085 0.915 21 H 0.177 0.823 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.023 0.977 25 H 0.017 0.983 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 11.452 -8.420 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.161 5.161 3 C -0.068 4.068 4 C -0.325 4.325 5 Br 0.059 6.941 6 C -0.037 4.037 7 C -0.083 4.083 8 C -0.004 4.004 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 N -0.113 5.113 18 H 0.091 0.909 19 H 0.109 0.891 20 H 0.103 0.897 21 H 0.194 0.806 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.975 10.826 -8.232 16.866 hybrid contribution 0.823 0.004 0.197 0.846 sum -9.152 10.829 -8.036 16.297 Atomic orbital electron populations 1.21817 0.74163 1.04490 1.03115 1.48478 1.06539 1.03949 1.57117 1.22250 0.89841 0.93657 1.01032 1.21764 0.92151 0.94466 1.24162 1.96552 1.34878 1.64313 1.98353 1.22898 0.94269 0.92246 0.94300 1.20457 0.89172 0.95793 1.02893 1.19015 0.96214 0.97083 0.88078 1.21193 1.12113 1.29858 0.92405 0.92454 1.24995 0.97277 0.96414 0.95629 1.69981 1.40679 1.45492 0.97229 0.86599 0.83324 0.80658 0.77453 1.20659 1.21334 1.19840 1.77538 1.00929 1.06572 1.26300 0.90888 0.89137 0.89677 0.80570 0.91315 0.90535 0.95902 0.96470 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.47 59.85 0.69 1.66 15 2 N -0.38 -5.74 4.01 -68.13 -0.27 -6.02 15 3 C 0.08 1.18 11.46 -17.17 -0.20 0.98 15 4 C -0.23 -4.16 6.52 -39.98 -0.26 -4.43 15 5 Br -0.02 -0.39 33.62 -68.01 -2.29 -2.68 15 6 C 0.13 2.68 6.47 -82.39 -0.53 2.15 15 7 C -0.04 -0.98 5.54 -27.88 -0.15 -1.13 15 8 C 0.03 0.93 4.95 -27.88 -0.14 0.79 15 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 12 N -0.89 -27.53 13.29 55.43 0.74 -26.79 15 13 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 15 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 17 N -0.29 -5.77 12.57 33.68 0.42 -5.34 15 18 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.18 1.76 8.06 -52.49 -0.42 1.34 15 22 H 0.07 1.51 8.14 -51.93 -0.42 1.08 15 23 H 0.08 1.64 7.87 -51.92 -0.41 1.23 15 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 256.17 15.07 3.86 3.86 Total: -1.00 -33.38 256.17 -6.48 -39.86 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: -2.91 Total: -6.27 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.01 Total: -13.62 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.89 Total: -38.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -2.29 Total: -2.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.38 -6.48 -39.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726787.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.536 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds