Wall clock time and date at job start Mon Mar 30 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47114 * 120.00005 * 2 1 3 5 5 H 1.08004 * 119.99563 * 114.48100 * 4 2 1 6 6 C 1.37877 * 119.99824 * 294.47907 * 4 2 1 7 7 N 1.31519 * 119.99474 * 164.56048 * 6 4 2 8 8 Si 1.86795 * 119.99960 * 344.82950 * 6 4 2 9 9 H 1.48493 * 109.47453 * 269.72180 * 8 6 4 10 10 H 1.48497 * 109.47218 * 29.72891 * 8 6 4 11 11 H 1.48504 * 109.46647 * 149.72553 * 8 6 4 12 12 C 1.50699 * 109.47075 * 239.99971 * 2 1 3 13 13 N 1.30846 * 125.89345 * 299.69265 * 12 2 1 14 14 N 1.40089 * 108.22372 * 179.90795 * 13 12 2 15 15 C 1.46501 * 126.03674 * 180.14338 * 14 13 12 16 16 C 1.35019 * 107.92425 * 0.35894 * 14 13 12 17 17 C 1.35371 * 107.73075 * 359.78904 * 16 14 13 18 18 Br 1.89100 * 126.04248 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.47190 * 53.65413 * 1 2 3 20 20 H 1.09000 * 109.47224 * 173.65783 * 1 2 3 21 21 H 1.09006 * 109.47084 * 293.65450 * 1 2 3 22 22 H 0.97000 * 120.00388 * 355.18049 * 7 6 4 23 23 H 1.08994 * 109.47153 * 270.24979 * 15 14 13 24 24 H 1.08994 * 109.47014 * 30.25413 * 15 14 13 25 25 H 1.09007 * 109.46520 * 150.25230 * 15 14 13 26 26 H 1.07996 * 126.13455 * 179.82064 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5777 -1.6376 1.1338 6 6 1.7956 -0.1767 2.4795 7 7 1.9539 -0.9200 3.5529 8 14 1.2428 1.5998 2.6467 9 1 2.4328 2.4784 2.7765 10 1 0.4667 1.9920 1.4429 11 1 0.3893 1.7410 3.8537 12 6 2.0323 -0.7104 -1.2305 13 7 1.7929 -1.9570 -1.5480 14 7 2.4347 -2.2306 -2.7628 15 6 2.4203 -3.5102 -3.4761 16 6 3.0728 -1.1082 -3.1577 17 6 2.8400 -0.1527 -2.2275 18 35 3.4909 1.6223 -2.2687 19 1 -0.3634 0.6091 -0.8278 20 1 -0.3634 -1.0214 -0.1135 21 1 -0.3633 0.4123 0.9414 22 1 2.1689 -1.8616 3.4635 23 1 3.2558 -4.1236 -3.1388 24 1 1.4834 -4.0288 -3.2729 25 1 2.5109 -3.3299 -4.5473 26 1 3.6626 -0.9932 -4.0550 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260743057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:56 Heat of formation + Delta-G solvation = 73.403854 kcal Electronic energy + Delta-G solvation = -12160.773524 eV Core-core repulsion = 9901.523820 eV Total energy + Delta-G solvation = -2259.249703 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.74981 -34.88300 -32.63735 -31.25263 -30.54637 -28.60640 -25.98919 -24.58038 -21.86435 -20.56765 -18.62398 -17.24524 -16.49515 -15.20442 -14.18515 -13.72084 -13.51761 -13.21971 -12.82896 -12.36962 -12.27726 -11.79405 -11.14594 -10.82797 -10.57004 -10.48863 -10.36240 -9.85504 -9.56728 -9.41941 -8.94100 -8.58647 -8.21385 -7.91138 -6.35857 -3.97493 2.11158 2.16370 3.07245 3.27191 3.50202 3.51646 3.66804 4.58656 4.77926 4.94921 5.20729 5.35506 5.41702 5.53070 5.91246 6.06535 6.50469 6.59952 6.80457 7.06064 7.19279 7.22864 7.52164 8.06485 8.31856 8.48283 8.99228 9.69081 11.02536 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.010849 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.219401 B = 2580.153410 C = 3521.589152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.048 0.952 4 C -0.583 4.583 5 H 0.057 0.943 6 C 0.034 3.966 7 N -0.908 5.908 8 Si 1.036 2.964 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.286 1.286 12 C 0.158 3.842 13 N -0.282 5.282 14 N -0.386 5.386 15 C 0.108 3.892 16 C 0.076 3.924 17 C -0.239 4.239 18 Br -0.034 7.034 19 H 0.023 0.977 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.268 0.732 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 1.935 -16.383 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.066 0.934 4 C -0.621 4.621 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.542 5.542 8 Si 0.864 3.136 9 H -0.210 1.210 10 H -0.192 1.192 11 H -0.212 1.212 12 C -0.010 4.010 13 N -0.103 5.103 14 N -0.166 5.166 15 C -0.034 4.034 16 C -0.074 4.074 17 C -0.331 4.331 18 Br 0.049 6.951 19 H 0.042 0.958 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.599 2.470 -15.046 15.331 hybrid contribution 0.854 -1.073 -1.483 2.020 sum 2.453 1.397 -16.529 16.769 Atomic orbital electron populations 1.22137 0.97582 1.00270 0.99469 1.17891 0.92471 0.95194 0.88372 0.93450 1.21845 1.39789 1.10325 0.90158 0.92431 1.25716 0.94284 1.05266 0.91823 1.70800 1.44486 1.08235 1.30691 0.84218 0.77429 0.75824 0.76140 1.21049 1.19248 1.21213 1.22849 0.92769 0.90189 0.95230 1.77638 1.20123 1.16245 0.96243 1.48589 1.39858 1.09631 1.18545 1.21751 1.04138 0.82197 0.95324 1.22168 0.98781 0.86665 0.99737 1.21802 1.14839 0.93929 1.02517 1.96466 1.86848 1.13029 1.98794 0.95750 0.93324 0.92688 0.92248 0.91056 0.89359 0.89936 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.46 37.16 0.31 -2.86 15 2 C 0.08 2.05 2.25 -92.93 -0.21 1.84 15 3 H 0.05 1.17 5.92 -51.93 -0.31 0.86 15 4 C -0.58 -16.96 8.83 -34.44 -0.30 -17.27 15 5 H 0.06 1.85 7.99 -52.48 -0.42 1.43 15 6 C 0.03 0.99 5.33 -17.82 -0.09 0.89 15 7 N -0.91 -28.47 13.70 55.43 0.76 -27.72 15 8 Si 1.04 25.44 26.17 -169.99 -4.45 20.99 15 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 10 H -0.27 -5.97 5.53 56.52 0.31 -5.66 15 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 12 C 0.16 3.64 5.66 -82.38 -0.47 3.18 15 13 N -0.28 -6.30 12.57 33.68 0.42 -5.88 15 14 N -0.39 -6.56 4.02 -68.13 -0.27 -6.83 15 15 C 0.11 1.18 11.47 59.85 0.69 1.86 15 16 C 0.08 1.22 11.46 -17.17 -0.20 1.02 15 17 C -0.24 -4.66 6.52 -39.98 -0.26 -4.92 15 18 Br -0.03 -0.59 33.22 -68.01 -2.26 -2.85 15 19 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 20 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.05 1.28 5.06 -51.93 -0.26 1.02 15 22 H 0.27 8.42 8.73 -40.82 -0.36 8.07 15 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 25 H 0.08 0.60 8.14 -51.92 -0.42 0.18 15 26 H 0.17 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 245.86 15.07 3.71 3.71 Total: -1.00 -33.37 245.86 -5.39 -38.76 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -2.77 Total: -3.92 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.53 Total: -16.25 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.91 Total: -40.43 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.45 Total: 20.99 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.26 Total: -2.85 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.37 -5.39 -38.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260743057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.161 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds