Wall clock time and date at job start Mon Mar 30 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47114 * 120.00005 * 2 1 3 5 5 H 1.08004 * 119.99563 * 114.48100 * 4 2 1 6 6 C 1.37877 * 119.99824 * 294.47907 * 4 2 1 7 7 N 1.31519 * 119.99474 * 164.56048 * 6 4 2 8 8 Si 1.86795 * 119.99960 * 344.82950 * 6 4 2 9 9 H 1.48493 * 109.47453 * 269.72180 * 8 6 4 10 10 H 1.48497 * 109.47218 * 29.72891 * 8 6 4 11 11 H 1.48504 * 109.46647 * 149.72553 * 8 6 4 12 12 C 1.50699 * 109.47075 * 239.99971 * 2 1 3 13 13 N 1.30846 * 125.89345 * 299.69265 * 12 2 1 14 14 N 1.40089 * 108.22372 * 179.90795 * 13 12 2 15 15 C 1.46501 * 126.03674 * 180.14338 * 14 13 12 16 16 C 1.35019 * 107.92425 * 0.35894 * 14 13 12 17 17 C 1.35371 * 107.73075 * 359.78904 * 16 14 13 18 18 Br 1.89100 * 126.04248 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.47190 * 53.65413 * 1 2 3 20 20 H 1.09000 * 109.47224 * 173.65783 * 1 2 3 21 21 H 1.09006 * 109.47084 * 293.65450 * 1 2 3 22 22 H 0.97000 * 120.00388 * 355.18049 * 7 6 4 23 23 H 1.08994 * 109.47153 * 270.24979 * 15 14 13 24 24 H 1.08994 * 109.47014 * 30.25413 * 15 14 13 25 25 H 1.09007 * 109.46520 * 150.25230 * 15 14 13 26 26 H 1.07996 * 126.13455 * 179.82064 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5777 -1.6376 1.1338 6 6 1.7956 -0.1767 2.4795 7 7 1.9539 -0.9200 3.5529 8 14 1.2428 1.5998 2.6467 9 1 2.4328 2.4784 2.7765 10 1 0.4667 1.9920 1.4429 11 1 0.3893 1.7410 3.8537 12 6 2.0323 -0.7104 -1.2305 13 7 1.7929 -1.9570 -1.5480 14 7 2.4347 -2.2306 -2.7628 15 6 2.4203 -3.5102 -3.4761 16 6 3.0728 -1.1082 -3.1577 17 6 2.8400 -0.1527 -2.2275 18 35 3.4909 1.6223 -2.2687 19 1 -0.3634 0.6091 -0.8278 20 1 -0.3634 -1.0214 -0.1135 21 1 -0.3633 0.4123 0.9414 22 1 2.1689 -1.8616 3.4635 23 1 3.2558 -4.1236 -3.1388 24 1 1.4834 -4.0288 -3.2729 25 1 2.5109 -3.3299 -4.5473 26 1 3.6626 -0.9932 -4.0550 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260743057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:56 Heat of formation + Delta-G solvation = 49.984873 kcal Electronic energy + Delta-G solvation = -12161.789047 eV Core-core repulsion = 9901.523820 eV Total energy + Delta-G solvation = -2260.265227 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.16943 -36.71927 -34.35235 -32.90085 -32.12812 -29.97615 -27.32162 -26.65830 -23.58840 -21.95370 -20.36631 -19.37196 -17.81158 -16.47422 -16.04978 -15.33692 -15.08851 -14.63855 -14.34629 -14.08099 -13.62116 -13.32619 -13.02195 -12.62255 -12.38663 -12.07380 -11.81393 -11.64127 -11.36669 -11.01443 -10.88016 -10.46323 -10.20507 -9.29855 -8.70046 -6.33222 0.79379 0.85483 1.52240 1.57439 1.67025 1.75937 1.83641 2.54335 3.09860 3.72347 3.81512 4.15805 4.40801 4.49358 4.58773 4.65386 4.73255 4.82156 4.93906 5.20727 5.42959 5.65885 5.97222 6.06080 6.08136 6.57191 6.77252 7.42660 8.65696 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.010849 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.219401 B = 2580.153410 C = 3521.589152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.080 3.920 3 H 0.054 0.946 4 C -0.581 4.581 5 H 0.008 0.992 6 C -0.018 4.018 7 N -0.940 5.940 8 Si 1.075 2.925 9 H -0.269 1.269 10 H -0.231 1.231 11 H -0.284 1.284 12 C 0.125 3.875 13 N -0.330 5.330 14 N -0.379 5.379 15 C 0.095 3.905 16 C 0.104 3.896 17 C -0.271 4.271 18 Br -0.019 7.019 19 H 0.053 0.947 20 H 0.034 0.966 21 H 0.052 0.948 22 H 0.249 0.751 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.130 0.870 26 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 3.144 -19.074 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 H 0.072 0.928 4 C -0.619 4.619 5 H 0.026 0.974 6 C -0.215 4.215 7 N -0.576 5.576 8 Si 0.894 3.106 9 H -0.195 1.195 10 H -0.154 1.154 11 H -0.210 1.210 12 C -0.042 4.042 13 N -0.152 5.152 14 N -0.159 5.159 15 C -0.045 4.045 16 C -0.047 4.047 17 C -0.362 4.362 18 Br 0.063 6.937 19 H 0.072 0.928 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.148 0.852 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.690 3.648 -17.766 18.215 hybrid contribution 0.903 -1.621 -0.772 2.010 sum 2.593 2.027 -18.537 18.827 Atomic orbital electron populations 1.22029 0.96389 1.00071 1.00474 1.17736 0.93413 0.95123 0.87788 0.92829 1.21934 1.38778 1.08590 0.92643 0.97399 1.27239 0.93806 1.08977 0.91433 1.70941 1.47313 1.07486 1.31846 0.83787 0.78183 0.70902 0.77696 1.19495 1.15409 1.21012 1.22580 0.94839 0.91043 0.95776 1.77475 1.22133 1.16451 0.99177 1.49010 1.38361 1.11634 1.16939 1.22265 1.04667 0.80095 0.97437 1.22922 0.96890 0.84916 0.99987 1.22005 1.15679 0.95691 1.02853 1.96448 1.86574 1.11901 1.98753 0.92828 0.94689 0.92923 0.94208 0.89864 0.89484 0.85162 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.46 71.98 0.61 -5.40 15 2 C 0.08 4.01 2.25 -12.29 -0.03 3.98 15 3 H 0.05 2.58 5.92 -2.39 -0.01 2.57 15 4 C -0.58 -34.91 8.83 25.60 0.23 -34.68 15 5 H 0.01 0.52 7.99 -2.91 -0.02 0.50 15 6 C -0.02 -1.05 5.33 84.65 0.45 -0.60 15 7 N -0.94 -61.10 13.70 21.45 0.29 -60.81 15 8 Si 1.07 50.63 26.17 68.60 1.80 52.43 15 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 10 H -0.23 -9.47 5.53 99.48 0.55 -8.92 15 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 12 C 0.12 5.70 5.66 43.11 0.24 5.95 15 13 N -0.33 -14.71 12.57 -47.35 -0.60 -15.31 15 14 N -0.38 -11.97 4.02 -369.47 -1.48 -13.45 15 15 C 0.09 1.75 11.47 127.77 1.47 3.22 15 16 C 0.10 2.95 11.46 83.54 0.96 3.91 15 17 C -0.27 -10.00 6.52 22.01 0.14 -9.86 15 18 Br -0.02 -0.62 33.22 -20.37 -0.68 -1.30 15 19 H 0.05 2.10 8.14 -2.38 -0.02 2.08 15 20 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.05 2.37 5.06 -2.38 -0.01 2.36 15 22 H 0.25 16.61 8.73 -92.71 -0.81 15.80 15 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.13 1.21 8.14 -2.38 -0.02 1.19 15 26 H 0.23 3.79 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -76.21 245.86 4.39 -71.83 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 0.99 Total: 0.09 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 4.07 Total: -33.48 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -1.79 Total: -89.57 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 1.80 Total: 52.43 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -0.68 Total: -1.30 kcal Total: -76.21 4.39 -71.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260743057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.811 kcal (2) G-P(sol) polarization free energy of solvation -76.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds