Wall clock time and date at job start Mon Mar 30 2020 06:44:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 109.47466 * 2 1
4 4 C 1.50704 * 109.47039 * 240.00137 * 2 1 3
5 5 H 1.08003 * 119.99989 * 245.37181 * 4 2 1
6 6 C 1.37871 * 120.00154 * 65.37614 * 4 2 1
7 7 N 1.31513 * 120.00413 * 185.16739 * 6 4 2
8 8 Si 1.86801 * 119.99857 * 5.16434 * 6 4 2
9 9 H 1.48496 * 109.47450 * 270.00006 * 8 6 4
10 10 H 1.48507 * 109.46941 * 30.00440 * 8 6 4
11 11 H 1.48497 * 109.47175 * 150.00051 * 8 6 4
12 12 C 1.50705 * 109.47390 * 120.00598 * 2 1 3
13 13 N 1.30843 * 125.89758 * 60.01442 * 12 2 1
14 14 N 1.40080 * 108.22023 * 180.02562 * 13 12 2
15 15 C 1.46504 * 126.03404 * 179.97438 * 14 13 12
16 16 C 1.35020 * 107.92925 * 0.02562 * 14 13 12
17 17 C 1.35360 * 107.72762 * 359.72666 * 16 14 13
18 18 Br 1.89109 * 126.04380 * 180.25884 * 17 16 14
19 19 H 1.08999 * 109.46930 * 294.96575 * 1 2 3
20 20 H 1.08995 * 109.46839 * 54.96996 * 1 2 3
21 21 H 1.09001 * 109.47403 * 174.97233 * 1 2 3
22 22 H 0.97002 * 120.00073 * 354.99342 * 7 6 4
23 23 H 1.09001 * 109.46900 * 90.03229 * 15 14 13
24 24 H 1.09003 * 109.46578 * 210.02788 * 15 14 13
25 25 H 1.09000 * 109.47451 * 330.02707 * 15 14 13
26 26 H 1.07999 * 126.13168 * 179.97438 * 16 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.5798 -1.6363 -1.1338
6 6 1.7930 -0.1783 -2.4797
7 7 2.1412 -0.8472 -3.5572
8 14 0.9742 1.4929 -2.6418
9 1 -0.4990 1.3181 -2.7073
10 1 1.3216 2.3305 -1.4657
11 1 1.4492 2.1587 -3.8812
12 6 2.0324 -0.7105 1.2304
13 7 1.7887 -1.9556 1.5506
14 7 2.4336 -2.2302 2.7634
15 6 2.4181 -3.5094 3.4774
16 6 3.0710 -1.1075 3.1588
17 6 2.8437 -0.1540 2.2252
18 35 3.5024 1.6183 2.2615
19 1 -0.3633 0.4338 0.9316
20 1 -0.3633 0.5899 -0.8415
21 1 -0.3634 -1.0237 -0.0901
22 1 2.6310 -1.6803 -3.4737
23 1 3.2539 -4.1231 3.1414
24 1 2.5076 -3.3285 4.5486
25 1 1.4814 -4.0280 3.2735
26 1 3.6601 -0.9923 4.0565
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260743060.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:44:58
Heat of formation + Delta-G solvation = 49.021908 kcal
Electronic energy + Delta-G solvation = -12164.124132 eV
Core-core repulsion = 9903.817148 eV
Total energy + Delta-G solvation = -2260.306984 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 258.006 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-42.17763 -36.73624 -34.35341 -32.91796 -32.14350 -29.98323 -27.33396 -26.65861
-23.61303 -21.95685 -20.37855 -19.40551 -17.81425 -16.48739 -16.09689 -15.36162
-15.11299 -14.64337 -14.33708 -14.09426 -13.64071 -13.33987 -13.06490 -12.72311
-12.40954 -11.92884 -11.81944 -11.66632 -11.50128 -10.92497 -10.83771 -10.59517
-10.21441 -9.30593 -8.70170 -6.36389 0.78776 0.85174 1.46042 1.57362
1.66036 1.74453 1.82743 2.50896 3.12119 3.71870 3.80383 4.14068
4.40895 4.48134 4.57292 4.65309 4.69283 4.79133 4.91607 5.13936
5.41805 5.63467 5.94706 6.03340 6.07614 6.55155 6.76353 7.41732
8.67173
Molecular weight = 258.01amu
Principal moments of inertia in cm(-1)
A = 0.021630 B = 0.010701 C = 0.007977
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1294.176627 B = 2615.849547 C = 3509.413928
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.073 3.927
3 H 0.057 0.943
4 C -0.573 4.573
5 H 0.009 0.991
6 C -0.023 4.023
7 N -0.946 5.946
8 Si 1.085 2.915
9 H -0.260 1.260
10 H -0.243 1.243
11 H -0.290 1.290
12 C 0.125 3.875
13 N -0.329 5.329
14 N -0.379 5.379
15 C 0.094 3.906
16 C 0.104 3.896
17 C -0.271 4.271
18 Br -0.020 7.020
19 H 0.056 0.944
20 H 0.050 0.950
21 H 0.038 0.962
22 H 0.248 0.752
23 H 0.083 0.917
24 H 0.130 0.870
25 H 0.087 0.913
26 H 0.227 0.773
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.887 2.901 19.195 19.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.052 3.948
3 H 0.074 0.926
4 C -0.611 4.611
5 H 0.027 0.973
6 C -0.219 4.219
7 N -0.583 5.583
8 Si 0.906 3.094
9 H -0.185 1.185
10 H -0.166 1.166
11 H -0.216 1.216
12 C -0.042 4.042
13 N -0.151 5.151
14 N -0.159 5.159
15 C -0.045 4.045
16 C -0.047 4.047
17 C -0.362 4.362
18 Br 0.062 6.938
19 H 0.075 0.925
20 H 0.069 0.931
21 H 0.057 0.943
22 H 0.057 0.943
23 H 0.101 0.899
24 H 0.148 0.852
25 H 0.106 0.894
26 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 0.948 3.317 17.895 18.225
hybrid contribution 1.178 -1.491 0.780 2.054
sum 2.126 1.826 18.676 18.885
Atomic orbital electron populations
1.21939 0.96339 1.00683 1.00180 1.17871 0.93490 0.95454 0.87940
0.92560 1.22013 1.38269 1.08112 0.92749 0.97299 1.27263 0.96684
1.06550 0.91437 1.70947 1.39084 1.16874 1.31369 0.83561 0.76876
0.71903 0.77065 1.18508 1.16650 1.21633 1.22547 0.94859 0.91081
0.95749 1.77475 1.21934 1.16388 0.99285 1.49012 1.38292 1.11599
1.17003 1.22272 1.04697 0.80087 0.97420 1.22916 0.96927 0.84903
0.99931 1.22002 1.15655 0.95800 1.02781 1.96451 1.86297 1.12242
1.98772 0.92523 0.93111 0.94284 0.94328 0.89851 0.85171 0.89437
0.75616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.03 8.76 71.98 0.63 -5.40 15
2 C 0.07 3.66 2.28 -12.28 -0.03 3.63 15
3 H 0.06 2.75 5.79 -2.39 -0.01 2.74 15
4 C -0.57 -34.52 8.90 25.60 0.23 -34.30 15
5 H 0.01 0.59 7.97 -2.91 -0.02 0.57 15
6 C -0.02 -1.40 5.43 84.65 0.46 -0.94 15
7 N -0.95 -61.85 13.70 21.45 0.29 -61.55 15
8 Si 1.08 51.51 25.29 68.60 1.73 53.24 15
9 H -0.26 -11.33 6.81 99.48 0.68 -10.65 15
10 H -0.24 -10.24 6.36 99.48 0.63 -9.60 15
11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 15
12 C 0.13 5.70 5.67 43.11 0.24 5.94 15
13 N -0.33 -14.57 12.57 -47.35 -0.60 -15.16 15
14 N -0.38 -11.90 4.01 -369.45 -1.48 -13.38 15
15 C 0.09 1.74 11.47 127.77 1.47 3.20 15
16 C 0.10 2.96 11.46 83.54 0.96 3.92 15
17 C -0.27 -10.02 6.52 22.01 0.14 -9.88 15
18 Br -0.02 -0.65 33.22 -20.37 -0.68 -1.33 15
19 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15
20 H 0.05 2.21 4.40 -2.39 -0.01 2.20 15
21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15
22 H 0.25 16.60 8.72 -92.71 -0.81 15.79 15
23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15
24 H 0.13 1.19 8.14 -2.39 -0.02 1.17 15
25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15
26 H 0.23 3.78 8.06 -2.91 -0.02 3.76 15
Total: -1.00 -76.45 245.22 4.41 -72.03
By element:
Atomic # 1 Polarization: -1.07 SS G_CDS: 1.04 Total: -0.03 kcal
Atomic # 6 Polarization: -37.92 SS G_CDS: 4.10 Total: -33.82 kcal
Atomic # 7 Polarization: -88.31 SS G_CDS: -1.79 Total: -90.10 kcal
Atomic # 14 Polarization: 51.51 SS G_CDS: 1.73 Total: 53.24 kcal
Atomic # 35 Polarization: -0.65 SS G_CDS: -0.68 Total: -1.33 kcal
Total: -76.45 4.41 -72.03 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260743060.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.056 kcal
(2) G-P(sol) polarization free energy of solvation -76.449 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds