Wall clock time and date at job start Mon Mar 30 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47466 * 2 1 4 4 C 1.50704 * 109.47039 * 240.00137 * 2 1 3 5 5 H 1.08003 * 119.99989 * 245.37181 * 4 2 1 6 6 C 1.37871 * 120.00154 * 65.37614 * 4 2 1 7 7 N 1.31513 * 120.00413 * 185.16739 * 6 4 2 8 8 Si 1.86801 * 119.99857 * 5.16434 * 6 4 2 9 9 H 1.48496 * 109.47450 * 270.00006 * 8 6 4 10 10 H 1.48507 * 109.46941 * 30.00440 * 8 6 4 11 11 H 1.48497 * 109.47175 * 150.00051 * 8 6 4 12 12 C 1.50705 * 109.47390 * 120.00598 * 2 1 3 13 13 N 1.30843 * 125.89758 * 60.01442 * 12 2 1 14 14 N 1.40080 * 108.22023 * 180.02562 * 13 12 2 15 15 C 1.46504 * 126.03404 * 179.97438 * 14 13 12 16 16 C 1.35020 * 107.92925 * 0.02562 * 14 13 12 17 17 C 1.35360 * 107.72762 * 359.72666 * 16 14 13 18 18 Br 1.89109 * 126.04380 * 180.25884 * 17 16 14 19 19 H 1.08999 * 109.46930 * 294.96575 * 1 2 3 20 20 H 1.08995 * 109.46839 * 54.96996 * 1 2 3 21 21 H 1.09001 * 109.47403 * 174.97233 * 1 2 3 22 22 H 0.97002 * 120.00073 * 354.99342 * 7 6 4 23 23 H 1.09001 * 109.46900 * 90.03229 * 15 14 13 24 24 H 1.09003 * 109.46578 * 210.02788 * 15 14 13 25 25 H 1.09000 * 109.47451 * 330.02707 * 15 14 13 26 26 H 1.07999 * 126.13168 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1783 -2.4797 7 7 2.1412 -0.8472 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3181 -2.7073 10 1 1.3216 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8812 12 6 2.0324 -0.7105 1.2304 13 7 1.7887 -1.9556 1.5506 14 7 2.4336 -2.2302 2.7634 15 6 2.4181 -3.5094 3.4774 16 6 3.0710 -1.1075 3.1588 17 6 2.8437 -0.1540 2.2252 18 35 3.5024 1.6183 2.2615 19 1 -0.3633 0.4338 0.9316 20 1 -0.3633 0.5899 -0.8415 21 1 -0.3634 -1.0237 -0.0901 22 1 2.6310 -1.6803 -3.4737 23 1 3.2539 -4.1231 3.1414 24 1 2.5076 -3.3285 4.5486 25 1 1.4814 -4.0280 3.2735 26 1 3.6601 -0.9923 4.0565 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260743060.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:58 Heat of formation + Delta-G solvation = 49.021908 kcal Electronic energy + Delta-G solvation = -12164.124132 eV Core-core repulsion = 9903.817148 eV Total energy + Delta-G solvation = -2260.306984 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.17763 -36.73624 -34.35341 -32.91796 -32.14350 -29.98323 -27.33396 -26.65861 -23.61303 -21.95685 -20.37855 -19.40551 -17.81425 -16.48739 -16.09689 -15.36162 -15.11299 -14.64337 -14.33708 -14.09426 -13.64071 -13.33987 -13.06490 -12.72311 -12.40954 -11.92884 -11.81944 -11.66632 -11.50128 -10.92497 -10.83771 -10.59517 -10.21441 -9.30593 -8.70170 -6.36389 0.78776 0.85174 1.46042 1.57362 1.66036 1.74453 1.82743 2.50896 3.12119 3.71870 3.80383 4.14068 4.40895 4.48134 4.57292 4.65309 4.69283 4.79133 4.91607 5.13936 5.41805 5.63467 5.94706 6.03340 6.07614 6.55155 6.76353 7.41732 8.67173 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.010701 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.176627 B = 2615.849547 C = 3509.413928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.573 4.573 5 H 0.009 0.991 6 C -0.023 4.023 7 N -0.946 5.946 8 Si 1.085 2.915 9 H -0.260 1.260 10 H -0.243 1.243 11 H -0.290 1.290 12 C 0.125 3.875 13 N -0.329 5.329 14 N -0.379 5.379 15 C 0.094 3.906 16 C 0.104 3.896 17 C -0.271 4.271 18 Br -0.020 7.020 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.038 0.962 22 H 0.248 0.752 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.087 0.913 26 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 2.901 19.195 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.052 3.948 3 H 0.074 0.926 4 C -0.611 4.611 5 H 0.027 0.973 6 C -0.219 4.219 7 N -0.583 5.583 8 Si 0.906 3.094 9 H -0.185 1.185 10 H -0.166 1.166 11 H -0.216 1.216 12 C -0.042 4.042 13 N -0.151 5.151 14 N -0.159 5.159 15 C -0.045 4.045 16 C -0.047 4.047 17 C -0.362 4.362 18 Br 0.062 6.938 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.148 0.852 25 H 0.106 0.894 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.948 3.317 17.895 18.225 hybrid contribution 1.178 -1.491 0.780 2.054 sum 2.126 1.826 18.676 18.885 Atomic orbital electron populations 1.21939 0.96339 1.00683 1.00180 1.17871 0.93490 0.95454 0.87940 0.92560 1.22013 1.38269 1.08112 0.92749 0.97299 1.27263 0.96684 1.06550 0.91437 1.70947 1.39084 1.16874 1.31369 0.83561 0.76876 0.71903 0.77065 1.18508 1.16650 1.21633 1.22547 0.94859 0.91081 0.95749 1.77475 1.21934 1.16388 0.99285 1.49012 1.38292 1.11599 1.17003 1.22272 1.04697 0.80087 0.97420 1.22916 0.96927 0.84903 0.99931 1.22002 1.15655 0.95800 1.02781 1.96451 1.86297 1.12242 1.98772 0.92523 0.93111 0.94284 0.94328 0.89851 0.85171 0.89437 0.75616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.76 71.98 0.63 -5.40 15 2 C 0.07 3.66 2.28 -12.28 -0.03 3.63 15 3 H 0.06 2.75 5.79 -2.39 -0.01 2.74 15 4 C -0.57 -34.52 8.90 25.60 0.23 -34.30 15 5 H 0.01 0.59 7.97 -2.91 -0.02 0.57 15 6 C -0.02 -1.40 5.43 84.65 0.46 -0.94 15 7 N -0.95 -61.85 13.70 21.45 0.29 -61.55 15 8 Si 1.08 51.51 25.29 68.60 1.73 53.24 15 9 H -0.26 -11.33 6.81 99.48 0.68 -10.65 15 10 H -0.24 -10.24 6.36 99.48 0.63 -9.60 15 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 15 12 C 0.13 5.70 5.67 43.11 0.24 5.94 15 13 N -0.33 -14.57 12.57 -47.35 -0.60 -15.16 15 14 N -0.38 -11.90 4.01 -369.45 -1.48 -13.38 15 15 C 0.09 1.74 11.47 127.77 1.47 3.20 15 16 C 0.10 2.96 11.46 83.54 0.96 3.92 15 17 C -0.27 -10.02 6.52 22.01 0.14 -9.88 15 18 Br -0.02 -0.65 33.22 -20.37 -0.68 -1.33 15 19 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 20 H 0.05 2.21 4.40 -2.39 -0.01 2.20 15 21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.25 16.60 8.72 -92.71 -0.81 15.79 15 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15 24 H 0.13 1.19 8.14 -2.39 -0.02 1.17 15 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 26 H 0.23 3.78 8.06 -2.91 -0.02 3.76 15 Total: -1.00 -76.45 245.22 4.41 -72.03 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.04 Total: -0.03 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.10 Total: -33.82 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.79 Total: -90.10 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.73 Total: 53.24 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.68 Total: -1.33 kcal Total: -76.45 4.41 -72.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260743060.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.056 kcal (2) G-P(sol) polarization free energy of solvation -76.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds