Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47031 * 2 1 4 4 N 1.30843 * 125.89447 * 90.03010 * 3 2 1 5 5 N 1.40092 * 108.22141 * 179.97438 * 4 3 2 6 6 C 1.46495 * 126.03477 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47571 * 305.02469 * 6 5 4 8 8 H 1.08002 * 119.99446 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00072 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99826 * 179.72119 * 9 7 6 11 11 Si 1.86800 * 120.00406 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 269.72576 * 11 9 7 13 13 H 1.48499 * 109.47026 * 29.72423 * 11 9 7 14 14 H 1.48496 * 109.47474 * 149.72459 * 11 9 7 15 15 C 1.35016 * 107.92491 * 0.24073 * 5 4 3 16 16 C 1.35367 * 107.73425 * 359.60931 * 15 5 4 17 17 Br 1.89092 * 126.04491 * 180.15067 * 16 15 5 18 18 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47232 * 300.00011 * 1 2 3 20 20 H 1.08998 * 109.47437 * 59.99691 * 1 2 3 21 21 H 1.09002 * 109.47003 * 240.00487 * 2 1 3 22 22 H 1.08998 * 109.47437 * 120.00309 * 2 1 3 23 23 H 1.09000 * 109.47378 * 185.02128 * 6 5 4 24 24 H 1.09001 * 109.47153 * 65.02249 * 6 5 4 25 25 H 0.96999 * 120.00128 * 180.27192 * 10 9 7 26 26 H 1.07995 * 126.13035 * 179.75944 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1439 1.0600 5 7 2.7337 3.4022 0.6347 6 6 3.1274 4.5154 1.5018 7 6 2.0045 4.8303 2.4562 8 1 1.0889 4.2586 2.4201 9 6 2.1456 5.8488 3.3747 10 7 1.1635 6.1272 4.2039 11 14 3.7289 6.8381 3.4366 12 1 4.6767 6.1965 4.3827 13 1 4.3367 6.8848 2.0824 14 1 3.4321 8.2194 3.8937 15 6 2.7303 3.4097 -0.7155 16 6 2.3058 2.1942 -1.1335 17 35 2.1099 1.6418 -2.9313 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 3.3425 5.3927 0.8917 24 1 4.0176 4.2387 2.0667 25 1 1.2612 6.8463 4.8475 26 1 3.0173 4.2364 -1.3484 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830747.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = 64.081696 kcal Electronic energy + Delta-G solvation = -11858.292360 eV Core-core repulsion = 9598.638418 eV Total energy + Delta-G solvation = -2259.653943 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.69321 -34.58236 -33.01608 -31.50761 -30.79878 -28.78496 -27.00762 -23.97627 -21.98258 -20.51415 -19.11066 -17.06176 -16.21737 -14.80498 -14.36257 -14.05358 -13.87626 -13.23567 -12.81758 -12.59893 -12.30181 -11.92385 -11.30365 -11.16530 -10.94660 -10.84606 -10.59464 -10.31059 -10.18171 -9.75851 -9.58690 -8.84892 -8.68286 -7.82818 -6.30106 -4.33839 2.10517 2.41164 3.01258 3.11077 3.15633 3.18327 3.39598 4.16471 4.94349 5.02870 5.10204 5.41004 5.62058 5.69717 5.89143 5.96488 6.11236 6.19959 6.38554 6.48553 6.59205 6.94745 7.21613 7.53146 8.21165 8.31199 8.78305 9.23600 10.82364 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.036632 B = 0.006273 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.173868 B = 4462.219102 C = 4971.276584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C 0.078 3.922 4 N -0.261 5.261 5 N -0.317 5.317 6 C 0.229 3.771 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.884 5.884 11 Si 0.874 3.126 12 H -0.271 1.271 13 H -0.265 1.265 14 H -0.279 1.279 15 C 0.085 3.915 16 C -0.253 4.253 17 Br -0.046 7.046 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.269 0.731 26 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -8.592 -13.587 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.089 4.089 4 N -0.084 5.084 5 N -0.095 5.095 6 C 0.110 3.890 7 C -0.577 4.577 8 H 0.105 0.895 9 C -0.126 4.126 10 N -0.521 5.521 11 Si 0.700 3.300 12 H -0.196 1.196 13 H -0.190 1.190 14 H -0.205 1.205 15 C -0.068 4.068 16 C -0.345 4.345 17 Br 0.036 6.964 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.912 -8.464 -12.646 15.493 hybrid contribution 0.812 0.966 -0.327 1.304 sum 3.725 -7.499 -12.973 15.440 Atomic orbital electron populations 1.21686 0.94371 1.01452 1.02676 1.19894 0.96197 0.88908 1.02951 1.22130 1.00373 0.97209 0.89226 1.77535 1.18483 0.90915 1.21458 1.49054 1.45471 1.11104 1.03897 1.20159 0.97687 0.80926 0.90202 1.21051 1.01508 1.18575 1.16522 0.89550 1.24813 0.96624 0.96453 0.94678 1.69865 1.31769 1.30348 1.20121 0.86895 0.83706 0.80222 0.79161 1.19596 1.18991 1.20461 1.22340 1.00319 0.97916 0.86232 1.21430 1.24335 0.97982 0.90717 1.96431 1.97718 1.90899 1.11315 0.92339 0.92215 0.92421 0.90238 0.90488 0.92840 0.94039 0.92040 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.16 0.37 -1.59 15 2 C -0.04 -0.59 6.32 -27.89 -0.18 -0.77 15 3 C 0.08 1.45 6.47 -82.38 -0.53 0.92 15 4 N -0.26 -5.84 12.41 33.68 0.42 -5.42 15 5 N -0.32 -6.94 3.67 -62.52 -0.23 -7.17 15 6 C 0.23 5.28 5.33 -5.20 -0.03 5.25 15 7 C -0.54 -14.93 9.79 -34.44 -0.34 -15.27 15 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 15 9 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 10 N -0.88 -26.17 13.96 55.43 0.77 -25.40 15 11 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 15 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 13 H -0.27 -5.55 6.54 56.52 0.37 -5.19 15 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 15 C 0.09 1.56 11.41 -17.17 -0.20 1.36 15 16 C -0.25 -4.43 6.52 -39.97 -0.26 -4.69 15 17 Br -0.05 -0.65 33.62 -68.01 -2.29 -2.93 15 18 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.08 1.02 7.87 -51.93 -0.41 0.61 15 22 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.05 1.13 7.13 -51.93 -0.37 0.76 15 24 H 0.04 0.94 7.57 -51.93 -0.39 0.55 15 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 26 H 0.17 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 252.65 15.07 3.81 3.81 Total: -1.00 -29.96 252.65 -6.32 -36.28 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -2.88 Total: -1.59 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.26 Total: -12.70 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.96 Total: -37.98 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.96 -6.32 -36.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830747.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.363 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds