Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47031 * 2 1 4 4 N 1.30843 * 125.89447 * 90.03010 * 3 2 1 5 5 N 1.40092 * 108.22141 * 179.97438 * 4 3 2 6 6 C 1.46495 * 126.03477 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47571 * 305.02469 * 6 5 4 8 8 H 1.08002 * 119.99446 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00072 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99826 * 179.72119 * 9 7 6 11 11 Si 1.86800 * 120.00406 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 269.72576 * 11 9 7 13 13 H 1.48499 * 109.47026 * 29.72423 * 11 9 7 14 14 H 1.48496 * 109.47474 * 149.72459 * 11 9 7 15 15 C 1.35016 * 107.92491 * 0.24073 * 5 4 3 16 16 C 1.35367 * 107.73425 * 359.60931 * 15 5 4 17 17 Br 1.89092 * 126.04491 * 180.15067 * 16 15 5 18 18 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47232 * 300.00011 * 1 2 3 20 20 H 1.08998 * 109.47437 * 59.99691 * 1 2 3 21 21 H 1.09002 * 109.47003 * 240.00487 * 2 1 3 22 22 H 1.08998 * 109.47437 * 120.00309 * 2 1 3 23 23 H 1.09000 * 109.47378 * 185.02128 * 6 5 4 24 24 H 1.09001 * 109.47153 * 65.02249 * 6 5 4 25 25 H 0.96999 * 120.00128 * 180.27192 * 10 9 7 26 26 H 1.07995 * 126.13035 * 179.75944 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1439 1.0600 5 7 2.7337 3.4022 0.6347 6 6 3.1274 4.5154 1.5018 7 6 2.0045 4.8303 2.4562 8 1 1.0889 4.2586 2.4201 9 6 2.1456 5.8488 3.3747 10 7 1.1635 6.1272 4.2039 11 14 3.7289 6.8381 3.4366 12 1 4.6767 6.1965 4.3827 13 1 4.3367 6.8848 2.0824 14 1 3.4321 8.2194 3.8937 15 6 2.7303 3.4097 -0.7155 16 6 2.3058 2.1942 -1.1335 17 35 2.1099 1.6418 -2.9313 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 3.3425 5.3927 0.8917 24 1 4.0176 4.2387 2.0667 25 1 1.2612 6.8463 4.8475 26 1 3.0173 4.2364 -1.3484 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260830747.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = 44.837082 kcal Electronic energy + Delta-G solvation = -11859.126870 eV Core-core repulsion = 9598.638418 eV Total energy + Delta-G solvation = -2260.488452 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.17002 -36.15375 -34.81305 -32.97406 -32.32642 -30.28393 -28.65867 -25.49244 -23.59784 -22.00881 -20.56821 -19.09981 -17.83796 -16.49381 -15.84680 -15.56834 -15.22244 -14.81348 -14.45744 -14.10497 -13.83704 -13.32444 -12.94331 -12.64105 -12.41927 -12.17614 -12.06018 -11.84791 -11.68392 -11.59651 -10.96183 -10.88582 -10.25262 -9.26516 -8.40859 -6.52368 0.74522 0.94959 1.34156 1.37628 1.46246 1.60830 1.87777 2.25885 2.91679 3.68045 3.75318 4.15744 4.33178 4.45130 4.51111 4.60079 4.68928 4.82875 5.02945 5.14208 5.27744 5.34228 5.60861 5.84771 6.26041 6.52491 6.81004 7.10645 8.76160 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.036632 B = 0.006273 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.173868 B = 4462.219102 C = 4971.276584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 C 0.080 3.920 4 N -0.321 5.321 5 N -0.344 5.344 6 C 0.236 3.764 7 C -0.550 4.550 8 H 0.026 0.974 9 C 0.017 3.983 10 N -0.940 5.940 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.229 1.229 14 H -0.277 1.277 15 C 0.086 3.914 16 C -0.260 4.260 17 Br -0.007 7.007 18 H 0.091 0.909 19 H 0.031 0.969 20 H 0.056 0.944 21 H 0.104 0.896 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.273 0.727 26 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -8.630 -15.722 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.087 4.087 4 N -0.143 5.143 5 N -0.123 5.123 6 C 0.117 3.883 7 C -0.588 4.588 8 H 0.044 0.956 9 C -0.183 4.183 10 N -0.579 5.579 11 Si 0.776 3.224 12 H -0.190 1.190 13 H -0.152 1.152 14 H -0.203 1.203 15 C -0.066 4.066 16 C -0.352 4.352 17 Br 0.075 6.925 18 H 0.110 0.890 19 H 0.051 0.949 20 H 0.075 0.925 21 H 0.122 0.878 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.673 -8.530 -14.819 17.726 hybrid contribution 0.135 0.836 0.232 0.878 sum 4.808 -7.694 -14.587 17.178 Atomic orbital electron populations 1.21652 0.93571 1.03182 1.01231 1.20099 0.96768 0.86926 1.04268 1.22814 0.98538 0.98402 0.88969 1.77460 1.20984 0.92000 1.23883 1.48918 1.47426 1.10887 1.05027 1.19959 0.95722 0.82532 0.90120 1.21181 1.01110 1.18138 1.18378 0.95569 1.25913 1.01054 0.97636 0.93666 1.70045 1.34891 1.31547 1.21405 0.85619 0.78022 0.77699 0.81044 1.19028 1.15186 1.20254 1.22998 0.99156 0.99255 0.85143 1.21728 1.23295 0.97608 0.92546 1.96460 1.97613 1.90570 1.07824 0.89035 0.94940 0.92514 0.87787 0.90216 0.89911 0.93451 0.91778 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.89 71.98 0.71 -2.91 15 2 C -0.04 -1.17 6.32 29.85 0.19 -0.98 15 3 C 0.08 2.97 6.47 43.11 0.28 3.24 15 4 N -0.32 -14.65 12.41 -47.35 -0.59 -15.23 15 5 N -0.34 -15.00 3.67 -351.71 -1.29 -16.29 15 6 C 0.24 10.74 5.33 85.63 0.46 11.20 15 7 C -0.55 -31.52 9.79 25.60 0.25 -31.27 15 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 15 9 C 0.02 0.93 5.47 84.65 0.46 1.39 15 10 N -0.94 -57.72 13.96 21.45 0.30 -57.42 15 11 Si 0.96 40.21 27.47 68.60 1.88 42.10 15 12 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 13 H -0.23 -8.26 6.54 99.48 0.65 -7.61 15 14 H -0.28 -11.50 7.11 99.48 0.71 -10.80 15 15 C 0.09 3.01 11.41 83.54 0.95 3.96 15 16 C -0.26 -8.68 6.52 22.01 0.14 -8.54 15 17 Br -0.01 -0.18 33.62 -20.37 -0.68 -0.86 15 18 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.03 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.10 2.40 7.87 -2.39 -0.02 2.38 15 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.08 3.26 7.13 -2.39 -0.02 3.24 15 24 H 0.05 2.08 7.57 -2.39 -0.02 2.06 15 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 26 H 0.21 5.49 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -68.49 252.65 4.18 -64.31 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.12 Total: 7.31 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.45 Total: -23.90 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.58 Total: -88.95 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.88 Total: 42.10 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.68 Total: -0.86 kcal Total: -68.49 4.18 -64.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830747.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.143 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds