Wall clock time and date at job start Mon Mar 30 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40087 * 126.03903 * 2 1 4 4 C 1.30838 * 108.22900 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.89013 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 305.02992 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47294 * 60.00559 * 11 9 7 13 13 H 1.48503 * 109.46954 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47431 * 300.00157 * 11 9 7 15 15 C 1.39860 * 108.21912 * 0.26844 * 4 3 2 16 16 C 1.34984 * 126.03546 * 179.97438 * 2 1 3 17 17 Br 1.89099 * 126.14025 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.47470 * 90.02037 * 1 2 3 19 19 H 1.09002 * 109.47137 * 210.02397 * 1 2 3 20 20 H 1.09000 * 109.46912 * 330.01925 * 1 2 3 21 21 H 1.09002 * 109.47120 * 185.02745 * 5 4 3 22 22 H 1.08998 * 109.46862 * 65.03547 * 5 4 3 23 23 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 24 24 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 25 25 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 26 26 H 1.08004 * 126.05159 * 179.70023 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5348 0.7326 0.0006 5 6 4.7493 1.6247 0.0002 6 6 4.6705 2.5932 -1.1816 7 6 5.8848 3.4857 -1.1815 8 1 6.6376 3.3732 -0.4154 9 6 6.0351 4.4453 -2.1602 10 7 5.1185 4.5820 -3.0933 11 14 7.5405 5.5511 -2.1605 12 1 8.7652 4.7201 -2.2819 13 1 7.4639 6.4912 -3.3075 14 1 7.5890 6.3217 -0.8919 15 6 3.5448 -0.6660 -0.0053 16 6 2.2590 -1.0916 0.0005 17 35 1.6802 -2.8918 0.0006 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 5.6482 1.0147 -0.0892 22 1 4.7851 2.1900 0.9315 23 1 3.7716 3.2032 -1.0922 24 1 4.6347 2.0278 -2.1128 25 1 5.2241 5.2573 -3.7816 26 1 4.4225 -1.2953 -0.0109 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260885261.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:27 Heat of formation + Delta-G solvation = 66.595329 kcal Electronic energy + Delta-G solvation = -11617.255480 eV Core-core repulsion = 9357.710536 eV Total energy + Delta-G solvation = -2259.544943 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.94745 -34.55783 -32.85371 -31.94571 -30.68251 -28.77828 -26.82129 -24.64357 -21.50446 -20.63023 -18.97980 -16.79999 -16.14135 -15.47463 -14.44052 -13.92470 -13.87595 -13.04375 -12.89642 -12.45717 -12.39169 -11.96738 -11.31248 -10.99395 -10.88743 -10.83963 -10.61309 -10.29944 -9.88404 -9.46298 -9.09229 -8.69600 -8.33251 -8.28483 -5.94442 -3.97482 1.13719 1.83150 2.74946 3.07085 3.37334 3.41425 3.43940 4.49984 4.60883 5.14403 5.27909 5.39538 5.41187 5.57178 5.75471 6.05366 6.48421 6.57734 6.80871 6.93570 7.11387 7.74347 7.85199 8.00619 8.06597 8.44674 9.09528 9.65941 11.16813 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.058249 B = 0.004460 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.579712 B = 6276.704593 C = 6502.263359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.368 5.368 3 N -0.262 5.262 4 C 0.100 3.900 5 C -0.039 4.039 6 C 0.029 3.971 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.224 4.224 16 C 0.061 3.939 17 Br 0.003 6.997 18 H 0.076 0.924 19 H 0.084 0.916 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.261 0.739 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -16.248 7.036 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.152 5.152 3 N -0.085 5.085 4 C -0.066 4.066 5 C -0.079 4.079 6 C -0.008 4.008 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.256 4.256 16 C -0.145 4.145 17 Br 0.085 6.915 18 H 0.095 0.905 19 H 0.102 0.898 20 H 0.112 0.888 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.935 -15.803 6.877 20.410 hybrid contribution 1.266 0.228 -0.181 1.299 sum -9.669 -15.575 6.696 19.517 Atomic orbital electron populations 1.21878 0.74361 1.04447 1.03654 1.48676 1.06581 1.02472 1.57473 1.77626 1.01841 1.04788 1.24262 1.22961 0.94226 0.93277 0.96132 1.20394 0.89327 0.95805 1.02325 1.19056 0.97605 0.92837 0.91332 1.21204 1.06190 1.17109 1.11602 0.92498 1.25017 0.96407 0.97425 0.95545 1.69973 1.34159 1.34372 1.14803 0.86648 0.83332 0.80488 0.77459 1.20207 1.21369 1.20226 1.21375 0.94924 0.95245 1.14074 1.22746 0.93466 0.86976 1.11273 1.96698 1.90341 1.06490 1.97987 0.90501 0.89751 0.88799 0.90892 0.91041 0.95736 0.96566 0.92981 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.28 59.84 0.67 1.78 15 2 N -0.37 -6.03 4.01 -66.36 -0.27 -6.29 15 3 N -0.26 -5.34 12.54 33.67 0.42 -4.92 15 4 C 0.10 2.01 6.49 -82.41 -0.53 1.48 15 5 C -0.04 -0.84 5.73 -27.89 -0.16 -1.00 15 6 C 0.03 0.79 4.93 -27.88 -0.14 0.65 15 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 10 N -0.89 -27.46 13.29 55.43 0.74 -26.73 15 11 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 15 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 C -0.22 -3.81 10.69 -39.97 -0.43 -4.23 15 16 C 0.06 0.94 7.34 -17.16 -0.13 0.81 15 17 Br 0.00 0.03 33.37 -68.01 -2.27 -2.24 15 18 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 19 H 0.08 0.74 7.66 -51.93 -0.40 0.34 15 20 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.07 1.43 8.12 -51.93 -0.42 1.01 15 22 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 26 H 0.15 2.25 8.06 -52.48 -0.42 1.83 15 LS Contribution 255.69 15.07 3.85 3.85 Total: -1.00 -32.34 255.69 -6.56 -38.90 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -2.90 Total: -5.19 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.12 Total: -14.20 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.89 Total: -37.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.27 Total: -2.24 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.34 -6.56 -38.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885261.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.496 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds