Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38554 * 119.97814 * 89.99802 * 11 10 9 13 13 O 1.36071 * 120.01267 * 0.02708 * 12 11 10 14 14 C 1.39111 * 119.97045 * 180.02562 * 12 11 10 15 15 O 1.36006 * 120.03512 * 180.02562 * 14 12 11 16 16 C 1.38559 * 119.93492 * 0.02562 * 14 12 11 17 17 C 1.38640 * 119.95522 * 359.97438 * 16 14 12 18 18 O 1.36002 * 119.98484 * 180.02562 * 17 16 14 19 19 C 1.38296 * 119.98226 * 269.72918 * 11 10 9 20 20 Cl 1.73609 * 119.96559 * 359.97438 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 0.96700 * 114.00404 * 90.00184 * 13 12 11 27 27 H 0.96695 * 114.00123 * 89.99748 * 15 14 12 28 28 H 1.07990 * 120.02509 * 180.02562 * 16 14 12 29 29 H 0.96695 * 114.00126 * 90.00585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1450 -5.5671 -1.1987 13 8 1.4853 -4.9783 -2.3773 14 6 0.4490 -6.7716 -1.1979 15 8 0.1086 -7.3618 -2.3750 16 6 0.1029 -7.3693 0.0032 17 6 0.4512 -6.7666 1.2021 18 8 0.1122 -7.3531 2.3814 19 6 1.1514 -5.5682 1.1993 20 17 1.5933 -4.8187 2.7017 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 2.3485 -5.2501 -2.7180 27 1 0.7750 -7.9745 -2.7150 28 1 -0.4371 -8.3046 0.0055 29 1 0.7790 -7.9646 2.7226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894594.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = -120.195575 kcal Electronic energy + Delta-G solvation = -16921.188501 eV Core-core repulsion = 13835.678631 eV Total energy + Delta-G solvation = -3085.509870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40117 -38.16727 -37.13198 -36.28326 -35.21578 -33.59899 -31.74853 -28.90848 -28.23967 -25.24176 -22.52070 -22.37295 -20.52688 -18.55258 -18.34161 -17.27236 -16.94690 -16.25298 -15.90960 -14.96876 -14.50575 -14.43205 -13.65265 -13.43027 -13.10699 -12.63643 -12.37832 -12.10049 -11.69549 -11.23975 -11.06981 -10.94254 -10.86240 -10.58590 -10.35856 -10.14271 -9.80468 -9.67085 -9.05272 -8.33753 -8.30010 -8.25300 -5.94519 -3.97454 0.97469 1.16356 2.39338 3.29752 3.34215 3.41322 3.44954 3.85839 4.23308 4.29916 4.49585 4.86090 5.32519 5.41290 5.48158 5.70442 5.81090 6.04805 6.13663 6.41831 6.58027 6.60603 7.01341 7.40771 7.50067 7.73075 7.86515 7.88350 8.04987 8.43603 9.08867 9.65749 11.16775 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.006540 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.188031 B = 4280.381319 C = 5113.259843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.077 4.077 11 C -0.047 4.047 12 C 0.084 3.916 13 O -0.468 6.468 14 C 0.099 3.901 15 O -0.483 6.483 16 C -0.165 4.165 17 C 0.122 3.878 18 O -0.483 6.483 19 C -0.060 4.060 20 Cl -0.042 7.042 21 H 0.260 0.740 22 H 0.020 0.980 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.381 0.619 27 H 0.385 0.615 28 H 0.142 0.858 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -17.773 0.178 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.114 4.114 11 C -0.049 4.049 12 C 0.038 3.962 13 O -0.277 6.277 14 C 0.053 3.947 15 O -0.292 6.292 16 C -0.184 4.184 17 C 0.076 3.924 18 O -0.293 6.293 19 C -0.087 4.087 20 Cl -0.013 7.013 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.237 0.763 27 H 0.241 0.759 28 H 0.160 0.840 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.488 -16.636 0.367 17.002 hybrid contribution 1.588 0.197 0.034 1.601 sum 5.076 -16.440 0.401 17.210 Atomic orbital electron populations 1.69990 1.06049 1.26443 1.50662 1.25006 0.94808 0.99163 0.95371 0.86552 0.80061 0.83916 0.77548 1.19747 1.21042 1.21051 1.21203 0.92939 0.90762 1.50736 0.92596 1.19028 0.93496 0.89880 0.97842 1.20870 0.98726 0.89840 1.01995 1.20458 0.97121 0.97471 0.89806 1.18420 0.99803 0.92121 0.85866 1.85068 1.40092 1.68052 1.34486 1.18557 0.98605 0.92014 0.85527 1.84943 1.46509 1.62158 1.35631 1.21307 1.04568 1.02174 0.90324 1.17862 0.96998 0.91880 0.85689 1.84909 1.46703 1.62470 1.35223 1.21129 1.03242 0.95805 0.88534 1.98372 1.91184 1.81474 1.30297 0.93050 0.96151 0.96082 0.91508 0.91190 0.76334 0.75942 0.83980 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.92 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 15 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.92 4.95 -27.88 -0.14 0.79 15 10 C -0.08 -1.60 4.66 -27.89 -0.13 -1.73 15 11 C -0.05 -0.86 5.15 -104.49 -0.54 -1.39 15 12 C 0.08 1.39 6.69 -39.14 -0.26 1.13 15 13 O -0.47 -7.54 12.32 -34.57 -0.43 -7.97 15 14 C 0.10 1.41 6.71 -39.14 -0.26 1.15 15 15 O -0.48 -5.96 13.28 -34.37 -0.46 -6.42 15 16 C -0.16 -2.18 9.92 -39.31 -0.39 -2.57 15 17 C 0.12 1.76 6.70 -39.23 -0.26 1.50 15 18 O -0.48 -6.00 12.95 -19.75 -0.26 -6.25 15 19 C -0.06 -1.01 6.33 -39.35 -0.25 -1.26 15 20 Cl -0.04 -0.73 26.82 -51.86 -1.39 -2.12 15 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.02 0.62 8.14 -51.93 -0.42 0.19 15 24 H 0.07 1.31 7.52 -51.93 -0.39 0.92 15 25 H 0.07 1.42 6.88 -51.93 -0.36 1.06 15 26 H 0.38 3.86 9.07 45.56 0.41 4.27 15 27 H 0.39 2.43 9.06 45.56 0.41 2.84 15 28 H 0.14 1.54 8.06 -52.49 -0.42 1.11 15 29 H 0.39 2.73 9.06 45.56 0.41 3.15 15 LS Contribution 277.19 15.07 4.18 4.18 Total: -1.00 -36.06 277.19 -5.60 -41.66 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -0.32 Total: 2.84 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.64 Total: -15.98 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.92 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.14 Total: -20.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.39 Total: -2.12 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -36.06 -5.60 -41.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894594.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.534 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds