Wall clock time and date at job start Mon Mar 30 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38554 * 119.97814 * 89.99802 * 11 10 9 13 13 O 1.36071 * 120.01267 * 0.02708 * 12 11 10 14 14 C 1.39111 * 119.97045 * 180.02562 * 12 11 10 15 15 O 1.36006 * 120.03512 * 180.02562 * 14 12 11 16 16 C 1.38559 * 119.93492 * 0.02562 * 14 12 11 17 17 C 1.38640 * 119.95522 * 359.97438 * 16 14 12 18 18 O 1.36002 * 119.98484 * 180.02562 * 17 16 14 19 19 C 1.38296 * 119.98226 * 269.72918 * 11 10 9 20 20 Cl 1.73609 * 119.96559 * 359.97438 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 0.96700 * 114.00404 * 90.00184 * 13 12 11 27 27 H 0.96695 * 114.00123 * 89.99748 * 15 14 12 28 28 H 1.07990 * 120.02509 * 180.02562 * 16 14 12 29 29 H 0.96695 * 114.00126 * 90.00585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1450 -5.5671 -1.1987 13 8 1.4853 -4.9783 -2.3773 14 6 0.4490 -6.7716 -1.1979 15 8 0.1086 -7.3618 -2.3750 16 6 0.1029 -7.3693 0.0032 17 6 0.4512 -6.7666 1.2021 18 8 0.1122 -7.3531 2.3814 19 6 1.1514 -5.5682 1.1993 20 17 1.5933 -4.8187 2.7017 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 2.3485 -5.2501 -2.7180 27 1 0.7750 -7.9745 -2.7150 28 1 -0.4371 -8.3046 0.0055 29 1 0.7790 -7.9646 2.7226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894594.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:22 Heat of formation + Delta-G solvation = -149.987234 kcal Electronic energy + Delta-G solvation = -16922.480365 eV Core-core repulsion = 13835.678631 eV Total energy + Delta-G solvation = -3086.801733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55639 -39.22832 -38.26446 -37.51025 -36.52115 -35.45532 -33.51139 -30.48425 -29.44834 -27.08790 -24.06536 -23.65181 -22.10345 -19.73348 -19.48951 -18.46856 -18.35139 -18.07720 -17.05916 -16.49186 -16.07562 -15.59546 -15.04897 -14.81843 -14.50564 -14.21488 -14.03032 -13.72648 -13.10021 -12.89090 -12.78645 -12.51922 -12.22476 -12.11245 -11.71148 -11.62859 -11.62325 -11.38554 -11.04695 -10.55745 -9.66459 -9.39880 -8.18375 -6.30349 -0.16222 -0.01630 1.13547 1.39790 1.40690 1.53919 2.18235 2.41816 2.81140 3.14742 3.17320 3.26333 3.70187 4.12929 4.31967 4.44623 4.61804 4.77981 4.85451 4.96207 5.12549 5.15822 5.42173 5.50250 5.72140 5.84480 6.22032 6.63267 6.71029 6.86399 6.94204 7.38701 8.94039 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.006540 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.188031 B = 4280.381319 C = 5113.259843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.045 3.955 10 C -0.061 4.061 11 C -0.075 4.075 12 C 0.073 3.927 13 O -0.490 6.490 14 C 0.111 3.889 15 O -0.490 6.490 16 C -0.150 4.150 17 C 0.131 3.869 18 O -0.488 6.488 19 C -0.077 4.077 20 Cl -0.056 7.056 21 H 0.262 0.738 22 H -0.011 1.011 23 H -0.018 1.018 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.404 0.596 27 H 0.414 0.586 28 H 0.175 0.825 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 -19.121 -0.117 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.008 3.992 10 C -0.099 4.099 11 C -0.077 4.077 12 C 0.027 3.973 13 O -0.302 6.302 14 C 0.065 3.935 15 O -0.303 6.303 16 C -0.169 4.169 17 C 0.085 3.915 18 O -0.301 6.301 19 C -0.104 4.104 20 Cl -0.027 7.027 21 H 0.071 0.929 22 H 0.007 0.993 23 H 0.000 1.000 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.263 0.737 27 H 0.274 0.726 28 H 0.192 0.808 29 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.277 -18.037 0.065 18.537 hybrid contribution 1.316 0.467 0.080 1.398 sum 5.592 -17.570 0.145 18.439 Atomic orbital electron populations 1.70142 1.08039 1.27635 1.51802 1.26015 0.95697 1.03496 0.94737 0.85372 0.79244 0.78596 0.77668 1.18095 1.20457 1.20516 1.21670 0.93598 0.91898 1.50307 0.91671 1.18780 0.93811 0.92261 0.94327 1.20490 0.97534 0.89467 1.02383 1.20238 0.99029 0.97081 0.91313 1.18575 1.00490 0.92986 0.85285 1.84995 1.41981 1.68821 1.34405 1.18500 0.97181 0.91210 0.86630 1.84876 1.47801 1.62795 1.34832 1.21592 1.03340 1.02792 0.89164 1.17872 0.95741 0.91013 0.86873 1.84852 1.47788 1.63010 1.34486 1.21319 1.04549 0.96912 0.87641 1.98357 1.91407 1.81964 1.30944 0.92877 0.99304 0.99962 0.90736 0.91073 0.73693 0.72614 0.80753 0.72636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.30 15 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 15 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 15 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 7 C -0.54 -31.43 9.11 25.60 0.23 -31.20 15 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 15 9 C 0.05 2.53 4.95 29.85 0.15 2.67 15 10 C -0.06 -2.62 4.66 29.85 0.14 -2.48 15 11 C -0.08 -2.75 5.15 -19.78 -0.10 -2.85 15 12 C 0.07 2.35 6.69 22.55 0.15 2.50 15 13 O -0.49 -15.58 12.32 -80.39 -0.99 -16.57 15 14 C 0.11 2.91 6.71 22.56 0.15 3.06 15 15 O -0.49 -10.56 13.28 -79.66 -1.06 -11.62 15 16 C -0.15 -3.51 9.92 22.44 0.22 -3.29 15 17 C 0.13 3.54 6.70 22.50 0.15 3.69 15 18 O -0.49 -10.88 12.95 -93.57 -1.21 -12.09 15 19 C -0.08 -2.58 6.33 22.42 0.14 -2.43 15 20 Cl -0.06 -1.93 26.82 -2.72 -0.07 -2.00 15 21 H 0.26 15.63 8.31 -92.71 -0.77 14.86 15 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 23 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 15 24 H 0.07 2.97 7.52 -2.39 -0.02 2.95 15 25 H 0.07 2.95 6.88 -2.39 -0.02 2.93 15 26 H 0.40 7.83 9.07 -74.06 -0.67 7.16 15 27 H 0.41 3.70 9.06 -74.06 -0.67 3.03 15 28 H 0.18 2.95 8.06 -2.92 -0.02 2.93 15 29 H 0.41 4.60 9.06 -74.06 -0.67 3.93 15 Total: -1.00 -79.34 277.19 -0.11 -79.44 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.78 Total: 4.67 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 1.70 Total: -29.99 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.28 Total: -59.30 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -3.26 Total: -40.29 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.00 kcal Total: -79.34 -0.11 -79.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894594.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.544 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds