Wall clock time and date at job start Mon Mar 30 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47415 * 90.00104 * 3 2 1 5 5 H 1.48504 * 109.46679 * 209.99682 * 3 2 1 6 6 H 1.48493 * 109.47150 * 329.99789 * 3 2 1 7 7 C 1.37881 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99690 * 181.89070 * 7 2 1 9 9 C 1.50692 * 120.00387 * 1.90779 * 7 2 1 10 10 C 1.50695 * 115.55600 * 94.44900 * 9 7 2 11 11 C 1.38469 * 120.00777 * 263.68037 * 10 9 7 12 12 F 1.35102 * 119.98981 * 0.02562 * 11 10 9 13 13 C 1.38422 * 120.00969 * 179.76559 * 11 10 9 14 14 C 1.38217 * 120.02438 * 0.51257 * 13 11 10 15 15 C 1.38395 * 120.01629 * 359.74189 * 14 13 11 16 16 F 1.35095 * 120.00994 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.00859 * 83.95468 * 10 9 7 18 18 Cl 1.73602 * 120.00946 * 0.02562 * 17 10 9 19 19 C 1.53002 * 117.49387 * 308.73796 * 9 7 2 20 20 C 1.52997 * 60.00174 * 252.51423 * 19 9 7 21 21 H 0.97003 * 120.00397 * 174.70645 * 1 2 3 22 22 H 1.08004 * 119.98254 * 180.25334 * 13 11 10 23 23 H 1.08006 * 119.99647 * 179.72529 * 14 13 11 24 24 H 1.09001 * 117.49952 * 0.02562 * 19 9 7 25 25 H 1.09004 * 117.49772 * 145.02481 * 19 9 7 26 26 H 1.09005 * 117.49861 * 252.51295 * 20 19 9 27 27 H 1.09000 * 117.50046 * 107.48969 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4400 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0314 9 6 1.2516 -2.4988 -0.0423 10 6 1.0572 -3.0924 -1.4137 11 6 -0.1232 -2.8713 -2.1031 12 9 -1.1004 -2.1227 -1.5463 13 6 -0.2999 -3.4125 -3.3648 14 6 0.6974 -4.1827 -3.9328 15 6 1.8754 -4.4088 -3.2426 16 9 2.8503 -5.1612 -3.7981 17 6 2.0551 -3.8628 -1.9816 18 17 3.5320 -4.1470 -1.1146 19 6 0.1329 -2.7027 0.9813 20 6 1.4501 -3.4676 1.1252 21 1 -0.4851 -0.8365 -0.0775 22 1 -1.2190 -3.2363 -3.9038 23 1 0.5573 -4.6085 -4.9155 24 1 -0.0588 -1.8930 1.6854 25 1 -0.7442 -3.2663 0.6629 26 1 1.4397 -4.5344 0.9013 27 1 2.1253 -3.1612 1.9241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905134.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:38 Heat of formation + Delta-G solvation = -64.440027 kcal Electronic energy + Delta-G solvation = -17312.202484 eV Core-core repulsion = 14118.022841 eV Total energy + Delta-G solvation = -3194.179644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.02545 -49.85880 -40.37354 -38.06557 -37.43126 -33.90240 -31.84856 -30.84815 -27.28855 -24.90015 -23.99380 -22.92877 -21.55845 -19.43763 -18.48986 -18.24268 -17.97441 -16.97969 -16.35608 -16.04164 -15.78715 -15.61535 -15.36515 -14.97934 -14.47026 -14.20710 -13.74038 -13.69606 -13.39729 -12.68213 -12.50471 -12.32430 -12.22904 -12.04398 -11.95307 -11.36764 -10.94493 -10.45033 -10.37526 -9.78142 -9.51595 -8.45797 -6.28046 -0.21407 -0.02405 1.02903 1.53665 1.61019 1.78626 2.24031 2.58072 2.89513 3.16437 3.23552 3.29017 3.58404 3.86700 3.97799 4.24355 4.35688 4.45670 4.65708 4.77641 4.83253 4.92343 4.98089 5.06968 5.28608 5.40534 5.69311 6.12851 6.26795 6.77445 7.54513 8.94934 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.009825 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.781440 B = 2849.261905 C = 3203.113621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.015 4.015 3 Si 1.106 2.894 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.285 1.285 7 C -0.575 4.575 8 H 0.048 0.952 9 C 0.029 3.971 10 C -0.045 4.045 11 C 0.073 3.927 12 F -0.134 7.134 13 C -0.111 4.111 14 C -0.114 4.114 15 C 0.089 3.911 16 F -0.127 7.127 17 C -0.062 4.062 18 Cl -0.044 7.044 19 C -0.171 4.171 20 C -0.158 4.158 21 H 0.287 0.713 22 H 0.182 0.818 23 H 0.195 0.805 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -8.816 -7.323 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.218 4.218 3 Si 0.929 3.071 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.211 1.211 7 C -0.612 4.612 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.047 4.047 11 C 0.053 3.947 12 F -0.112 7.112 13 C -0.129 4.129 14 C -0.133 4.133 15 C 0.068 3.932 16 F -0.106 7.106 17 C -0.090 4.090 18 Cl -0.015 7.015 19 C -0.209 4.209 20 C -0.195 4.195 21 H 0.102 0.898 22 H 0.199 0.801 23 H 0.212 0.788 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.646 -7.219 -7.161 10.189 hybrid contribution 0.316 -1.446 0.413 1.537 sum 0.962 -8.666 -6.748 11.025 Atomic orbital electron populations 1.70700 1.07554 1.33625 1.44969 1.26947 0.96819 1.05236 0.92805 0.83067 0.74213 0.72216 0.77569 1.20120 1.20158 1.21075 1.21426 0.93489 0.90101 1.56191 0.93404 1.17712 1.00041 0.95550 0.83862 1.19743 0.91377 0.94308 0.99254 1.17875 0.86430 0.96256 0.94170 1.91470 1.60279 1.74060 1.85425 1.21390 1.02140 0.97165 0.92244 1.21189 0.89916 0.99950 1.02196 1.17515 0.88531 0.96232 0.90898 1.91507 1.61091 1.73406 1.84547 1.20616 0.90969 1.03582 0.93844 1.98339 1.31978 1.94718 1.76465 1.22707 0.92019 1.01931 1.04218 1.22930 0.98970 0.96149 1.01425 0.89834 0.80115 0.78802 0.91381 0.90377 0.89348 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.12 21.45 0.28 -54.45 15 2 C -0.02 -0.86 5.40 84.66 0.46 -0.40 15 3 Si 1.11 50.13 29.90 68.60 2.05 52.18 15 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 7 C -0.57 -31.44 8.88 25.60 0.23 -31.22 15 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 15 9 C 0.03 1.40 0.65 -53.68 -0.03 1.37 15 10 C -0.04 -1.93 5.00 -19.80 -0.10 -2.03 15 11 C 0.07 2.89 7.10 22.37 0.16 3.05 15 12 F -0.13 -6.04 13.46 44.97 0.61 -5.44 15 13 C -0.11 -3.15 10.02 22.31 0.22 -2.93 15 14 C -0.11 -2.85 10.02 22.30 0.22 -2.62 15 15 C 0.09 2.80 7.27 22.39 0.16 2.96 15 16 F -0.13 -3.80 16.84 44.97 0.76 -3.04 15 17 C -0.06 -2.40 6.29 22.36 0.14 -2.26 15 18 Cl -0.04 -1.66 26.65 -2.72 -0.07 -1.74 15 19 C -0.17 -8.07 7.08 30.59 0.22 -7.85 15 20 C -0.16 -6.81 8.70 30.59 0.27 -6.54 15 21 H 0.29 16.47 3.31 -92.71 -0.31 16.16 15 22 H 0.18 3.74 8.06 -2.91 -0.02 3.71 15 23 H 0.19 2.98 8.06 -2.91 -0.02 2.96 15 24 H 0.07 3.53 7.59 -2.39 -0.02 3.52 15 25 H 0.08 3.45 7.74 -2.39 -0.02 3.43 15 26 H 0.09 3.43 8.13 -2.38 -0.02 3.41 15 27 H 0.08 3.61 8.14 -2.39 -0.02 3.59 15 Total: -1.00 -63.26 256.54 7.23 -56.02 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.67 Total: 4.94 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 1.94 Total: -48.48 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 9 Polarization: -9.84 SS G_CDS: 1.36 Total: -8.48 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.74 kcal Total: -63.26 7.23 -56.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905134.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.418 kcal (2) G-P(sol) polarization free energy of solvation -63.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds