Wall clock time and date at job start Mon Mar 30 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35425 * 126.05065 * 2 1 4 4 Br 1.89101 * 126.13904 * 0.02562 * 3 2 1 5 5 N 1.34976 * 107.72544 * 180.27700 * 3 2 1 6 6 H 0.97002 * 126.03741 * 179.72840 * 5 3 2 7 7 N 1.40077 * 107.92644 * 359.73383 * 5 3 2 8 8 C 1.30840 * 108.22919 * 359.97438 * 7 5 3 9 9 C 1.50701 * 125.89338 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.47179 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46915 * 60.02483 * 9 8 7 12 12 C 1.50697 * 109.47154 * 300.02395 * 9 8 7 13 13 H 1.08002 * 120.00033 * 29.07809 * 12 9 8 14 14 C 1.37874 * 119.99971 * 209.07642 * 12 9 8 15 15 N 1.31522 * 120.00070 * 352.54937 * 14 12 9 16 16 Si 1.86796 * 120.00021 * 172.54390 * 14 12 9 17 17 H 1.48501 * 109.47410 * 270.00351 * 16 14 12 18 18 H 1.48503 * 109.46952 * 30.00502 * 16 14 12 19 19 H 1.48506 * 109.47061 * 150.00297 * 16 14 12 20 20 H 1.08999 * 109.47358 * 270.17474 * 1 2 3 21 21 H 1.09001 * 109.46844 * 30.17516 * 1 2 3 22 22 H 1.09008 * 109.47117 * 150.16880 * 1 2 3 23 23 H 1.09000 * 109.46949 * 177.37159 * 11 9 8 24 24 H 1.09001 * 109.46791 * 297.36865 * 11 9 8 25 25 H 1.08999 * 109.47483 * 57.37116 * 11 9 8 26 26 H 0.96998 * 119.99516 * 354.49301 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3040 1.0949 0.0000 4 35 1.7256 2.8953 0.0007 5 7 3.5853 0.6705 -0.0062 6 1 4.3736 1.2357 -0.0114 7 7 3.5755 -0.7302 -0.0040 8 6 2.3300 -1.1308 0.0039 9 6 1.8628 -2.5636 0.0094 10 1 0.7732 -2.5904 0.0152 11 6 2.3970 -3.2694 1.2574 12 6 2.3759 -3.2640 -1.2223 13 1 3.3025 -2.9466 -1.6775 14 6 1.6625 -4.3100 -1.7681 15 7 0.6153 -4.7926 -1.1355 16 14 2.1834 -5.0418 -3.4059 17 1 1.4968 -4.3238 -4.5097 18 1 3.6535 -4.9037 -3.5646 19 1 1.8141 -6.4796 -3.4455 20 1 -0.3634 0.0031 1.0276 21 1 -0.3633 0.8884 -0.5166 22 1 -0.3634 -0.8916 -0.5112 23 1 2.0208 -4.2921 1.2854 24 1 3.4865 -3.2837 1.2284 25 1 2.0642 -2.7354 2.1474 26 1 0.3917 -4.4677 -0.2494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260914630.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:50 Heat of formation + Delta-G solvation = 54.477042 kcal Electronic energy + Delta-G solvation = -12160.591853 eV Core-core repulsion = 9900.521422 eV Total energy + Delta-G solvation = -2260.070432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76984 -34.85474 -32.33412 -31.99328 -30.31958 -28.74699 -25.78766 -24.81458 -22.61817 -19.79153 -18.87124 -17.36577 -16.54270 -14.63760 -13.98452 -13.75755 -13.44718 -12.83896 -12.52923 -12.35701 -11.68262 -11.55428 -11.20474 -10.93963 -10.77048 -10.64385 -10.62298 -10.10083 -9.89965 -9.80903 -8.91629 -8.45017 -8.26903 -7.94881 -6.35821 -4.06396 1.31012 2.05155 3.33377 3.42053 3.46648 3.50929 3.65770 4.55242 5.21569 5.41238 5.60267 5.73680 6.07406 6.12536 6.38657 6.51727 6.59231 6.68734 6.85504 7.17097 7.25830 7.40731 7.62052 8.10541 8.30089 8.49465 8.86477 9.62302 11.02233 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.039950 B = 0.006243 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.714244 B = 4484.302601 C = 4540.716703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.188 4.188 3 C 0.056 3.944 4 Br -0.003 7.003 5 N -0.479 5.479 6 H 0.433 0.567 7 N -0.268 5.268 8 C 0.137 3.863 9 C 0.093 3.907 10 H 0.055 0.945 11 C -0.130 4.130 12 C -0.582 4.582 13 H 0.054 0.946 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 1.068 2.932 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.285 1.285 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.018 0.982 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 15.141 3.173 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.203 4.203 3 C -0.150 4.150 4 Br 0.079 6.921 5 N -0.189 5.189 6 H 0.277 0.723 7 N -0.090 5.090 8 C -0.031 4.031 9 C 0.072 3.928 10 H 0.073 0.927 11 C -0.189 4.189 12 C -0.621 4.621 13 H 0.072 0.928 14 C -0.181 4.181 15 N -0.546 5.546 16 Si 0.896 3.104 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.211 1.211 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.356 14.325 2.021 14.530 hybrid contribution 0.334 1.523 1.107 1.912 sum 1.690 15.848 3.127 16.241 Atomic orbital electron populations 1.20177 0.89020 1.02809 1.01658 1.20013 0.97384 0.90218 1.12675 1.22416 0.88618 0.91448 1.12501 1.96667 1.88983 1.08442 1.98042 1.46393 1.04727 1.06472 1.61295 0.72308 1.77499 1.21218 0.85457 1.24872 1.23084 0.88693 0.97903 0.93437 1.17678 0.96845 0.82785 0.95450 0.92744 1.21897 1.00596 1.00046 0.96348 1.21868 1.10410 1.18084 1.11693 0.92759 1.25787 0.94000 0.94479 1.03829 1.70772 1.26375 1.42549 1.14917 0.83562 0.75442 0.76362 0.75003 1.21417 1.21482 1.21089 0.91946 0.92145 0.90496 0.92959 0.93679 0.96282 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.82 36.01 0.35 -0.98 15 2 C -0.19 -3.70 6.10 -105.02 -0.64 -4.34 15 3 C 0.06 0.96 7.69 -17.17 -0.13 0.83 15 4 Br 0.00 -0.04 33.51 -68.01 -2.28 -2.32 15 5 N -0.48 -8.39 7.36 31.73 0.23 -8.16 15 6 H 0.43 5.94 8.96 -182.61 -1.64 4.30 15 7 N -0.27 -5.90 12.70 33.67 0.43 -5.47 15 8 C 0.14 3.11 5.71 -82.41 -0.47 2.64 15 9 C 0.09 2.32 2.31 -92.92 -0.21 2.10 15 10 H 0.05 1.39 5.75 -51.93 -0.30 1.10 15 11 C -0.13 -3.02 9.08 37.16 0.34 -2.69 15 12 C -0.58 -16.21 8.28 -34.44 -0.29 -16.49 15 13 H 0.05 1.58 7.82 -52.49 -0.41 1.17 15 14 C 0.02 0.65 5.44 -17.82 -0.10 0.56 15 15 N -0.91 -26.48 13.55 55.43 0.75 -25.73 15 16 Si 1.07 25.18 29.91 -169.99 -5.08 20.09 15 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 15 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.06 0.89 7.77 -51.93 -0.40 0.49 15 22 H 0.08 1.41 7.24 -51.92 -0.38 1.04 15 23 H 0.05 1.24 7.65 -51.93 -0.40 0.84 15 24 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 26 H 0.27 7.73 6.37 -40.82 -0.26 7.47 15 LS Contribution 248.77 15.07 3.75 3.75 Total: -1.00 -30.12 248.77 -7.20 -37.32 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -3.85 Total: -1.11 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.15 Total: -18.37 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.41 Total: -39.36 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.28 Total: -2.32 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.12 -7.20 -37.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914630.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.796 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds