Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35431 * 126.04958 * 2 1 4 4 Br 1.89094 * 126.14047 * 359.97438 * 3 2 1 5 5 N 1.34987 * 107.71915 * 179.97438 * 3 2 1 6 6 H 0.97001 * 126.03520 * 179.97438 * 5 3 2 7 7 N 1.40080 * 107.92849 * 359.75859 * 5 3 2 8 8 C 1.30833 * 108.22727 * 0.40741 * 7 5 3 9 9 C 1.50698 * 125.89273 * 179.85218 * 8 7 5 10 10 H 1.09001 * 109.47612 * 179.70219 * 9 8 7 11 11 C 1.53006 * 109.47184 * 299.70165 * 9 8 7 12 12 C 1.50699 * 109.46911 * 59.69760 * 9 8 7 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00364 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99946 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47324 * 59.99539 * 16 14 12 18 18 H 1.48494 * 109.47376 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46921 * 299.99915 * 16 14 12 20 20 H 1.08999 * 109.47301 * 270.00425 * 1 2 3 21 21 H 1.09008 * 109.46849 * 30.00110 * 1 2 3 22 22 H 1.08997 * 109.47335 * 149.99591 * 1 2 3 23 23 H 1.09001 * 109.47002 * 299.99404 * 11 9 8 24 24 H 1.08993 * 109.46955 * 59.99842 * 11 9 8 25 25 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 26 26 H 0.96999 * 120.00396 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3040 1.0950 0.0000 4 35 1.7256 2.8953 -0.0007 5 7 3.5853 0.6704 0.0006 6 1 4.3737 1.2356 0.0004 7 7 3.5755 -0.7303 0.0066 8 6 2.3300 -1.1308 0.0006 9 6 1.8627 -2.5635 0.0008 10 1 0.7730 -2.5904 0.0003 11 6 2.3907 -3.2724 -1.2481 12 6 2.3819 -3.2611 1.2316 13 1 2.9891 -2.7209 1.9428 14 6 2.0816 -4.5890 1.4497 15 7 1.3417 -5.2467 0.5840 16 14 2.7246 -5.4535 2.9757 17 1 2.2112 -4.7657 4.1877 18 1 2.2643 -6.8653 2.9759 19 1 4.2091 -5.4164 2.9771 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 2.0152 -2.7679 -2.1384 24 1 3.4803 -3.2456 -1.2477 25 1 2.0531 -4.3088 -1.2478 26 1 1.1302 -6.1808 0.7377 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260914642.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = 60.266121 kcal Electronic energy + Delta-G solvation = -12120.931573 eV Core-core repulsion = 9861.112175 eV Total energy + Delta-G solvation = -2259.819398 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70524 -34.55626 -32.29254 -31.96515 -30.27036 -28.67020 -25.73526 -25.09989 -22.56304 -19.68320 -18.52814 -17.29795 -16.11796 -14.64149 -14.52430 -13.65953 -12.99228 -12.74812 -12.41158 -12.30176 -11.64331 -11.46218 -11.09891 -10.87523 -10.72781 -10.58452 -10.48702 -10.16519 -9.95455 -9.54594 -9.08892 -8.45665 -8.34208 -7.92093 -5.98866 -4.03907 1.35593 2.10678 3.35376 3.37429 3.39245 3.47281 3.48914 4.47275 5.29276 5.34502 5.64690 5.84473 6.13924 6.19897 6.49683 6.59978 6.88410 6.99516 7.18046 7.34868 7.53211 7.67556 7.89261 8.09761 8.28298 8.45871 8.96403 9.59568 11.07325 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.046336 B = 0.005936 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.134577 B = 4715.860534 C = 4786.234424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.188 4.188 3 C 0.054 3.946 4 Br -0.005 7.005 5 N -0.480 5.480 6 H 0.433 0.567 7 N -0.264 5.264 8 C 0.132 3.868 9 C 0.111 3.889 10 H 0.050 0.950 11 C -0.131 4.131 12 C -0.502 4.502 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.008 0.992 24 H 0.032 0.968 25 H 0.089 0.911 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 15.267 -2.282 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.203 4.203 3 C -0.152 4.152 4 Br 0.077 6.923 5 N -0.190 5.190 6 H 0.276 0.724 7 N -0.087 5.087 8 C -0.036 4.036 9 C 0.091 3.909 10 H 0.068 0.932 11 C -0.190 4.190 12 C -0.541 4.541 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.027 0.973 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.067 15.388 -2.308 15.560 hybrid contribution 0.222 -0.148 0.876 0.916 sum 0.290 15.239 -1.431 15.309 Atomic orbital electron populations 1.20161 0.89008 1.02231 1.02092 1.20044 0.97404 0.90242 1.12605 1.22421 0.88678 0.91361 1.12718 1.96660 1.88996 1.08624 1.98057 1.46434 1.04695 1.06575 1.61314 0.72360 1.77545 1.21298 0.85241 1.24577 1.23274 0.88605 0.98265 0.93473 1.17506 0.96676 0.81170 0.95586 0.93174 1.21761 0.99160 1.03370 0.94680 1.20964 1.32203 0.95397 1.05486 0.92558 1.24900 0.95052 0.97240 0.96623 1.69856 1.37707 1.10139 1.35311 0.86604 0.79342 0.78396 0.83362 1.20307 1.21267 1.20279 0.91582 0.92392 0.90748 0.97294 0.94851 0.89266 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 9.82 36.00 0.35 -0.91 15 2 C -0.19 -3.65 6.10 -105.02 -0.64 -4.29 15 3 C 0.05 0.92 7.69 -17.17 -0.13 0.78 15 4 Br 0.00 -0.06 33.50 -68.01 -2.28 -2.34 15 5 N -0.48 -8.40 7.36 31.73 0.23 -8.17 15 6 H 0.43 5.94 8.96 -182.61 -1.64 4.30 15 7 N -0.26 -5.83 12.70 33.67 0.43 -5.40 15 8 C 0.13 2.99 5.66 -82.41 -0.47 2.52 15 9 C 0.11 2.80 2.68 -92.92 -0.25 2.55 15 10 H 0.05 1.30 6.90 -51.93 -0.36 0.94 15 11 C -0.13 -3.23 8.95 37.16 0.33 -2.90 15 12 C -0.50 -13.90 8.55 -34.44 -0.29 -14.19 15 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 15 15 N -0.89 -24.96 11.32 55.43 0.63 -24.33 15 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 20 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 21 H 0.06 0.81 7.76 -51.92 -0.40 0.40 15 22 H 0.07 1.25 7.23 -51.93 -0.38 0.87 15 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 15 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 247.90 15.07 3.74 3.74 Total: -1.00 -29.13 247.90 -7.36 -36.49 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.90 Total: -1.61 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.19 Total: -14.80 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 1.29 Total: -37.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.28 Total: -2.34 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.13 -7.36 -36.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914642.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.761 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds