Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35431 * 126.04958 * 2 1 4 4 Br 1.89094 * 126.14047 * 359.97438 * 3 2 1 5 5 N 1.34987 * 107.71915 * 179.97438 * 3 2 1 6 6 H 0.97001 * 126.03520 * 179.97438 * 5 3 2 7 7 N 1.40080 * 107.92849 * 359.75859 * 5 3 2 8 8 C 1.30833 * 108.22727 * 0.40741 * 7 5 3 9 9 C 1.50698 * 125.89273 * 179.85218 * 8 7 5 10 10 H 1.09001 * 109.47612 * 179.70219 * 9 8 7 11 11 C 1.53006 * 109.47184 * 299.70165 * 9 8 7 12 12 C 1.50699 * 109.46911 * 59.69760 * 9 8 7 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00364 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99946 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47324 * 59.99539 * 16 14 12 18 18 H 1.48494 * 109.47376 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46921 * 299.99915 * 16 14 12 20 20 H 1.08999 * 109.47301 * 270.00425 * 1 2 3 21 21 H 1.09008 * 109.46849 * 30.00110 * 1 2 3 22 22 H 1.08997 * 109.47335 * 149.99591 * 1 2 3 23 23 H 1.09001 * 109.47002 * 299.99404 * 11 9 8 24 24 H 1.08993 * 109.46955 * 59.99842 * 11 9 8 25 25 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 26 26 H 0.96999 * 120.00396 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3040 1.0950 0.0000 4 35 1.7256 2.8953 -0.0007 5 7 3.5853 0.6704 0.0006 6 1 4.3737 1.2356 0.0004 7 7 3.5755 -0.7303 0.0066 8 6 2.3300 -1.1308 0.0006 9 6 1.8627 -2.5635 0.0008 10 1 0.7730 -2.5904 0.0003 11 6 2.3907 -3.2724 -1.2481 12 6 2.3819 -3.2611 1.2316 13 1 2.9891 -2.7209 1.9428 14 6 2.0816 -4.5890 1.4497 15 7 1.3417 -5.2467 0.5840 16 14 2.7246 -5.4535 2.9757 17 1 2.2112 -4.7657 4.1877 18 1 2.2643 -6.8653 2.9759 19 1 4.2091 -5.4164 2.9771 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 2.0152 -2.7679 -2.1384 24 1 3.4803 -3.2456 -1.2477 25 1 2.0531 -4.3088 -1.2478 26 1 1.1302 -6.1808 0.7377 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260914642.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = 42.165926 kcal Electronic energy + Delta-G solvation = -12121.716457 eV Core-core repulsion = 9861.112175 eV Total energy + Delta-G solvation = -2260.604282 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.21741 -36.47327 -33.80844 -33.58665 -31.86100 -30.30566 -27.20318 -27.11638 -24.39996 -21.21802 -20.24032 -18.74425 -18.17706 -16.63009 -16.02091 -15.18841 -14.85148 -14.38523 -14.04988 -13.62023 -13.42277 -13.02836 -12.87889 -12.79546 -12.39292 -12.15996 -12.10488 -11.80747 -11.76061 -11.25957 -10.99988 -10.45124 -10.08477 -9.35875 -8.08103 -6.20067 0.03651 0.66847 1.43820 1.45044 1.52550 1.78673 2.12596 2.47479 3.20069 3.81248 4.24477 4.30740 4.67382 4.88488 4.94342 5.01804 5.14867 5.21113 5.27294 5.57342 5.66150 5.82454 6.04657 6.26362 6.34205 6.76628 6.84200 7.46087 8.96843 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.046336 B = 0.005936 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.134577 B = 4715.860534 C = 4786.234424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.211 4.211 3 C 0.065 3.935 4 Br 0.047 6.953 5 N -0.463 5.463 6 H 0.449 0.551 7 N -0.298 5.298 8 C 0.105 3.895 9 C 0.111 3.889 10 H 0.036 0.964 11 C -0.119 4.119 12 C -0.520 4.520 13 H 0.041 0.959 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.026 0.974 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 16.900 -1.943 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.226 4.226 3 C -0.142 4.142 4 Br 0.129 6.871 5 N -0.175 5.175 6 H 0.296 0.704 7 N -0.122 5.122 8 C -0.061 4.061 9 C 0.091 3.909 10 H 0.054 0.946 11 C -0.177 4.177 12 C -0.558 4.558 13 H 0.059 0.941 14 C -0.178 4.178 15 N -0.551 5.551 16 Si 0.778 3.222 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.087 0.913 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.016 17.029 -1.972 17.143 hybrid contribution 0.249 -0.490 0.745 0.926 sum 0.265 16.539 -1.227 16.586 Atomic orbital electron populations 1.20185 0.87381 1.03025 1.02547 1.20299 0.98761 0.89843 1.13652 1.22751 0.87864 0.93558 1.10018 1.96720 1.88539 1.04025 1.97844 1.46367 1.05879 1.05388 1.59911 0.70375 1.77402 1.21378 0.87755 1.25615 1.22940 0.89763 0.97943 0.95466 1.17294 0.95728 0.83151 0.94767 0.94577 1.21582 0.98293 1.02294 0.95552 1.21146 1.32365 0.95991 1.06325 0.94114 1.25582 0.95229 0.97772 0.99228 1.69954 1.38221 1.10377 1.36513 0.85701 0.78572 0.77675 0.80225 1.19818 1.20318 1.20334 0.91269 0.89714 0.91807 0.95501 0.95880 0.91290 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 9.82 71.23 0.70 -1.63 15 2 C -0.21 -7.99 6.10 -20.12 -0.12 -8.12 15 3 C 0.06 2.08 7.69 83.56 0.64 2.72 15 4 Br 0.05 1.05 33.50 -20.37 -0.68 0.37 15 5 N -0.46 -15.49 7.36 -53.52 -0.39 -15.88 15 6 H 0.45 11.39 8.96 -213.33 -1.91 9.48 15 7 N -0.30 -13.10 12.70 -47.39 -0.60 -13.70 15 8 C 0.11 4.82 5.66 43.10 0.24 5.07 15 9 C 0.11 5.72 2.68 -12.28 -0.03 5.69 15 10 H 0.04 1.93 6.90 -2.39 -0.02 1.92 15 11 C -0.12 -5.97 8.95 71.98 0.64 -5.33 15 12 C -0.52 -29.36 8.55 25.60 0.22 -29.14 15 13 H 0.04 2.37 7.74 -2.91 -0.02 2.35 15 14 C 0.02 1.17 5.30 84.66 0.45 1.62 15 15 N -0.91 -51.65 11.32 21.45 0.24 -51.41 15 16 Si 0.95 44.15 29.54 68.60 2.03 46.18 15 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 20 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 21 H 0.08 2.15 7.76 -2.38 -0.02 2.14 15 22 H 0.06 2.13 7.23 -2.39 -0.02 2.11 15 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 25 H 0.07 3.72 6.07 -2.39 -0.01 3.70 15 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 Total: -1.00 -62.12 247.90 2.62 -59.50 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -0.71 Total: 4.07 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 2.74 Total: -29.12 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -0.75 Total: -80.99 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 35 Polarization: 1.05 SS G_CDS: -0.68 Total: 0.37 kcal Total: -62.12 2.62 -59.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914642.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.665 kcal (2) G-P(sol) polarization free energy of solvation -62.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds