Wall clock time and date at job start Mon Mar 30 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35425 * 126.04589 * 2 1 4 4 Br 1.89106 * 126.14034 * 359.97438 * 3 2 1 5 5 N 1.34983 * 107.72346 * 179.97438 * 3 2 1 6 6 H 0.96992 * 126.04096 * 180.02562 * 5 3 2 7 7 N 1.40085 * 107.91888 * 359.75506 * 5 3 2 8 8 C 1.30832 * 108.23210 * 0.41402 * 7 5 3 9 9 C 1.50706 * 125.89148 * 179.84910 * 8 7 5 10 10 C 1.52999 * 109.46953 * 269.69552 * 9 8 7 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72054 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47405 * 60.00219 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 19 19 H 1.09003 * 109.46911 * 269.99821 * 1 2 3 20 20 H 1.09001 * 109.46846 * 29.99721 * 1 2 3 21 21 H 1.09000 * 109.47025 * 150.00073 * 1 2 3 22 22 H 1.09000 * 109.46974 * 149.69300 * 9 8 7 23 23 H 1.09001 * 109.46547 * 29.69391 * 9 8 7 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 8 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 8 26 26 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3040 1.0950 0.0000 4 35 1.7254 2.8954 -0.0007 5 7 3.5854 0.6706 0.0006 6 1 4.3736 1.2358 0.0011 7 7 3.5755 -0.7302 0.0066 8 6 2.3300 -1.1308 0.0006 9 6 1.8628 -2.5636 0.0007 10 6 1.7052 -3.0487 -1.4417 11 6 1.2386 -4.4817 -1.4415 12 1 1.0755 -4.9964 -0.5062 13 6 1.0249 -5.1372 -2.6355 14 7 1.2288 -4.5122 -3.7745 15 14 0.4458 -6.9132 -2.6352 16 1 -0.8604 -7.0078 -1.9353 17 1 0.2930 -7.3842 -4.0353 18 1 1.4451 -7.7596 -1.9351 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 0.9038 -2.6329 0.5143 23 1 2.5961 -3.1847 0.5150 24 1 2.6642 -2.9793 -1.9552 25 1 0.9719 -2.4275 -1.9560 26 1 1.0788 -4.9735 -4.6145 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928379.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:48 Heat of formation + Delta-G solvation = 53.407568 kcal Electronic energy + Delta-G solvation = -11761.416821 eV Core-core repulsion = 9501.300014 eV Total energy + Delta-G solvation = -2260.116808 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.03630 -34.32806 -32.54445 -32.42963 -30.57484 -29.26026 -25.99849 -25.35479 -21.74571 -20.15422 -18.92884 -17.55216 -16.27698 -14.90362 -14.41268 -14.19241 -13.07505 -12.99951 -12.56448 -12.41999 -12.19356 -11.71703 -11.36072 -10.96616 -10.91398 -10.77717 -10.64285 -10.31284 -9.82457 -9.72469 -9.12728 -8.77422 -8.32466 -8.19438 -5.97491 -4.00656 1.14138 1.81224 2.98884 3.17164 3.35920 3.40286 3.42795 4.48060 4.95185 5.38292 5.40143 5.46566 5.82221 6.00784 6.24448 6.40717 6.44345 6.58595 6.78334 7.06929 7.27592 7.69725 7.75781 7.94886 8.01990 8.40813 9.05825 9.63140 11.13700 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.055172 B = 0.004788 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.382689 B = 5846.364480 C = 5995.875494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 C 0.060 3.940 4 Br 0.006 6.994 5 N -0.471 5.471 6 H 0.437 0.563 7 N -0.271 5.271 8 C 0.110 3.890 9 C -0.041 4.041 10 C 0.032 3.968 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 16.275 8.413 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.146 4.146 4 Br 0.088 6.912 5 N -0.182 5.182 6 H 0.281 0.719 7 N -0.095 5.095 8 C -0.058 4.058 9 C -0.080 4.080 10 C -0.006 4.006 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.253 16.559 8.227 18.532 hybrid contribution -0.408 -0.611 -0.200 0.762 sum 0.845 15.948 8.027 17.874 Atomic orbital electron populations 1.20241 0.88532 1.03400 1.01928 1.19976 0.97629 0.89900 1.11997 1.22498 0.88336 0.92032 1.11741 1.96718 1.88842 1.07716 1.97962 1.46280 1.05071 1.06015 1.60799 0.71863 1.77465 1.20885 0.86492 1.24629 1.22873 0.89177 0.97942 0.95768 1.20402 1.00057 0.84935 1.02618 1.19041 0.97574 0.95718 0.88269 1.21169 1.45338 0.97105 0.92420 0.92446 1.25009 0.95579 0.98108 0.95625 1.69965 1.49054 1.36979 0.97286 0.86645 0.79310 0.85051 0.76915 1.20166 1.21357 1.20234 0.91677 0.91871 0.90002 0.90703 0.91267 0.96300 0.96168 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.83 36.01 0.35 -0.87 15 2 C -0.18 -3.10 6.10 -105.02 -0.64 -3.74 15 3 C 0.06 0.91 7.69 -17.17 -0.13 0.77 15 4 Br 0.01 0.07 33.50 -68.01 -2.28 -2.21 15 5 N -0.47 -7.24 7.36 31.73 0.23 -7.00 15 6 H 0.44 5.12 8.96 -182.62 -1.64 3.48 15 7 N -0.27 -5.22 12.70 33.67 0.43 -4.79 15 8 C 0.11 2.15 6.47 -82.41 -0.53 1.62 15 9 C -0.04 -0.86 5.39 -27.88 -0.15 -1.01 15 10 C 0.03 0.83 4.96 -27.88 -0.14 0.70 15 11 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 15 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -26.93 13.29 55.43 0.74 -26.20 15 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 19 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.06 0.83 7.76 -51.93 -0.40 0.43 15 21 H 0.08 1.31 7.92 -51.93 -0.41 0.90 15 22 H 0.07 1.45 7.92 -51.93 -0.41 1.03 15 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 253.89 15.07 3.83 3.83 Total: -1.00 -30.94 253.89 -7.82 -38.76 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.09 Total: -3.00 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.65 Total: -15.88 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 1.40 Total: -37.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -2.28 Total: -2.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.94 -7.82 -38.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928379.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.166 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds