Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40085 * 126.04070 * 2 1 4 4 C 1.30842 * 108.22062 * 180.27488 * 3 2 1 5 5 C 1.39919 * 108.21235 * 359.74118 * 4 3 2 6 6 Br 1.89100 * 126.04674 * 179.97438 * 5 4 3 7 7 C 1.35023 * 126.03641 * 179.82612 * 2 1 3 8 8 C 1.50701 * 126.12976 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47212 * 89.71715 * 8 7 2 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 H 1.08998 * 109.47034 * 270.17791 * 1 2 3 19 19 H 1.08996 * 109.46762 * 30.17324 * 1 2 3 20 20 H 1.08991 * 109.47399 * 150.17436 * 1 2 3 21 21 H 1.08005 * 125.89289 * 179.76933 * 4 3 2 22 22 H 1.09002 * 109.47060 * 209.71771 * 8 7 2 23 23 H 1.09001 * 109.47380 * 329.71858 * 8 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 26 26 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5348 0.7323 -0.0060 5 6 3.5444 -0.6668 -0.0039 6 35 5.0809 -1.7691 -0.0111 7 6 2.2593 -1.0919 0.0033 8 6 1.7978 -2.5264 0.0082 9 6 1.6343 -3.0145 -1.4326 10 6 1.1734 -4.4493 -1.4277 11 1 1.0127 -4.9617 -0.4907 12 6 0.9558 -5.1076 -2.6195 13 7 1.1510 -4.4834 -3.7606 14 14 0.3851 -6.8862 -2.6135 15 1 -0.9165 -6.9860 -1.9057 16 1 0.2251 -7.3595 -4.0119 17 1 1.3924 -7.7269 -1.9180 18 1 -0.3633 0.0032 1.0276 19 1 -0.3633 0.8884 -0.5165 20 1 -0.3634 -0.8915 -0.5111 21 1 4.4054 1.3715 -0.0111 22 1 2.5363 -3.1440 0.5194 23 1 0.8419 -2.5989 0.5270 24 1 0.8957 -2.3970 -1.9438 25 1 2.5901 -2.9421 -1.9515 26 1 0.9976 -4.9464 -4.5991 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984591.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = 61.646579 kcal Electronic energy + Delta-G solvation = -11933.624959 eV Core-core repulsion = 9673.865422 eV Total energy + Delta-G solvation = -2259.759537 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.98321 -34.29905 -33.08999 -32.08696 -30.30083 -28.33977 -26.18104 -25.04488 -21.54757 -20.83884 -19.19968 -16.65652 -15.97520 -15.25313 -14.49267 -14.16067 -13.78263 -12.97666 -12.81853 -12.45727 -12.16620 -12.12971 -11.33209 -10.98969 -10.78255 -10.61994 -10.51231 -9.99098 -9.85010 -9.63631 -9.23046 -8.89394 -8.41708 -7.93831 -6.06179 -4.10381 2.07572 2.14278 2.87869 2.98780 3.29927 3.35109 3.37038 4.40370 4.83241 5.09321 5.29742 5.31146 5.35668 5.64621 5.69315 5.84177 6.34991 6.40421 6.63611 6.74111 7.20491 7.53804 7.65998 7.87103 7.90939 8.28825 8.95265 9.54208 11.04746 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.007936 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.829656 B = 3527.477384 C = 4399.865266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.368 5.368 3 N -0.305 5.305 4 C 0.076 3.924 5 C -0.257 4.257 6 Br -0.028 7.028 7 C 0.156 3.844 8 C -0.065 4.065 9 C 0.035 3.965 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.098 0.902 21 H 0.185 0.815 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.014 0.986 25 H 0.027 0.973 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 7.613 8.180 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 N -0.126 5.126 4 C -0.112 4.112 5 C -0.347 4.347 6 Br 0.055 6.945 7 C 0.025 3.975 8 C -0.104 4.104 9 C -0.003 4.003 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 H 0.091 0.909 19 H 0.106 0.894 20 H 0.117 0.883 21 H 0.202 0.798 22 H 0.104 0.896 23 H 0.086 0.914 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.634 8.240 7.985 12.036 hybrid contribution -0.117 -1.324 -0.168 1.339 sum 3.517 6.916 7.817 11.014 Atomic orbital electron populations 1.21934 0.73813 1.05207 1.03196 1.48367 1.06650 1.03205 1.56664 1.77314 1.01020 1.08329 1.25904 1.23669 0.95530 0.92971 0.98982 1.21386 0.92089 0.93982 1.27286 1.96527 1.33051 1.66408 1.98496 1.21568 0.89591 0.92110 0.94214 1.20773 1.01011 0.85191 1.03436 1.19027 0.97921 0.95835 0.87522 1.21098 1.45853 0.96827 0.92494 0.92442 1.24997 0.95422 0.98171 0.95558 1.69962 1.48707 1.37029 0.97343 0.86635 0.79265 0.84967 0.77024 1.20227 1.21270 1.20081 0.90889 0.89392 0.88324 0.79811 0.89560 0.91442 0.96811 0.95417 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 11.10 59.85 0.66 2.00 15 2 N -0.37 -6.40 4.02 -63.86 -0.26 -6.65 15 3 N -0.31 -5.34 12.57 30.64 0.39 -4.96 15 4 C 0.08 1.25 12.01 -17.34 -0.21 1.04 15 5 C -0.26 -4.62 6.52 -39.98 -0.26 -4.88 15 6 Br -0.03 -0.46 33.48 -68.01 -2.28 -2.74 15 7 C 0.16 2.94 6.19 -82.21 -0.51 2.43 15 8 C -0.07 -1.30 4.96 -27.88 -0.14 -1.43 15 9 C 0.03 0.86 4.95 -27.89 -0.14 0.72 15 10 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 15 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 13 N -0.89 -26.23 13.29 55.43 0.74 -25.49 15 14 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 15 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.10 1.36 7.67 -51.93 -0.40 0.97 15 21 H 0.18 2.33 8.06 -52.48 -0.42 1.91 15 22 H 0.09 1.71 7.76 -51.93 -0.40 1.30 15 23 H 0.07 1.23 7.74 -51.93 -0.40 0.83 15 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 15 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 254.36 15.07 3.83 3.83 Total: -1.00 -30.50 254.36 -6.46 -36.96 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -2.86 Total: -3.95 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.00 Total: -13.02 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.87 Total: -37.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.28 Total: -2.74 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.50 -6.46 -36.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984591.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.608 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds