Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40085 * 126.04070 * 2 1 4 4 C 1.30842 * 108.22062 * 180.27488 * 3 2 1 5 5 C 1.39919 * 108.21235 * 359.74118 * 4 3 2 6 6 Br 1.89100 * 126.04674 * 179.97438 * 5 4 3 7 7 C 1.35023 * 126.03641 * 179.82612 * 2 1 3 8 8 C 1.50701 * 126.12976 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47212 * 89.71715 * 8 7 2 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 H 1.08998 * 109.47034 * 270.17791 * 1 2 3 19 19 H 1.08996 * 109.46762 * 30.17324 * 1 2 3 20 20 H 1.08991 * 109.47399 * 150.17436 * 1 2 3 21 21 H 1.08005 * 125.89289 * 179.76933 * 4 3 2 22 22 H 1.09002 * 109.47060 * 209.71771 * 8 7 2 23 23 H 1.09001 * 109.47380 * 329.71858 * 8 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 26 26 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5348 0.7323 -0.0060 5 6 3.5444 -0.6668 -0.0039 6 35 5.0809 -1.7691 -0.0111 7 6 2.2593 -1.0919 0.0033 8 6 1.7978 -2.5264 0.0082 9 6 1.6343 -3.0145 -1.4326 10 6 1.1734 -4.4493 -1.4277 11 1 1.0127 -4.9617 -0.4907 12 6 0.9558 -5.1076 -2.6195 13 7 1.1510 -4.4834 -3.7606 14 14 0.3851 -6.8862 -2.6135 15 1 -0.9165 -6.9860 -1.9057 16 1 0.2251 -7.3595 -4.0119 17 1 1.3924 -7.7269 -1.9180 18 1 -0.3633 0.0032 1.0276 19 1 -0.3633 0.8884 -0.5165 20 1 -0.3634 -0.8915 -0.5111 21 1 4.4054 1.3715 -0.0111 22 1 2.5363 -3.1440 0.5194 23 1 0.8419 -2.5989 0.5270 24 1 0.8957 -2.3970 -1.9438 25 1 2.5901 -2.9421 -1.9515 26 1 0.9976 -4.9464 -4.5991 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984591.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = 43.317927 kcal Electronic energy + Delta-G solvation = -11934.419749 eV Core-core repulsion = 9673.865422 eV Total energy + Delta-G solvation = -2260.554327 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.32293 -36.11624 -34.45002 -33.84872 -31.78226 -29.92344 -27.38600 -26.90272 -23.42515 -22.13639 -20.62416 -18.57938 -17.48679 -16.69626 -16.32515 -15.51274 -15.26066 -14.51741 -14.33914 -13.92065 -13.82347 -13.33456 -13.13094 -12.80201 -12.56576 -12.15899 -11.88577 -11.73035 -11.71044 -11.28008 -10.95461 -10.53542 -10.27553 -9.31628 -8.17872 -6.29482 0.69782 0.79783 1.44195 1.46546 1.53746 1.55452 1.71817 2.43540 3.16523 3.60750 3.68534 4.04107 4.36368 4.37481 4.52708 4.61970 4.68642 4.86445 4.96428 5.40684 5.47913 5.62394 5.82044 5.89215 6.20308 6.53474 6.86110 7.40217 8.93579 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.007936 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.829656 B = 3527.477384 C = 4399.865266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.370 5.370 3 N -0.315 5.315 4 C 0.079 3.921 5 C -0.268 4.268 6 Br -0.022 7.022 7 C 0.134 3.866 8 C -0.049 4.049 9 C 0.046 3.954 10 C -0.539 4.539 11 H 0.068 0.932 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.267 1.267 18 H 0.100 0.900 19 H 0.103 0.897 20 H 0.089 0.911 21 H 0.218 0.782 22 H 0.087 0.913 23 H 0.084 0.916 24 H -0.010 1.010 25 H -0.005 1.005 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 7.451 9.241 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 N -0.135 5.135 4 C -0.108 4.108 5 C -0.359 4.359 6 Br 0.061 6.939 7 C 0.002 3.998 8 C -0.088 4.088 9 C 0.008 3.992 10 C -0.577 4.577 11 H 0.086 0.914 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.787 3.213 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.192 1.192 18 H 0.118 0.882 19 H 0.122 0.878 20 H 0.108 0.892 21 H 0.234 0.766 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.009 0.991 25 H 0.013 0.987 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.305 8.084 9.067 12.590 hybrid contribution 0.001 -1.214 -0.497 1.311 sum 3.306 6.871 8.571 11.472 Atomic orbital electron populations 1.22214 0.71984 1.05557 1.05119 1.48698 1.07826 1.02698 1.55935 1.77291 1.01571 1.08503 1.26170 1.24193 0.96205 0.92648 0.97790 1.21677 0.92178 0.95009 1.27018 1.96520 1.32473 1.66437 1.98468 1.21415 0.90418 0.91924 0.96018 1.20442 1.02039 0.86160 1.00166 1.18781 0.95242 0.94992 0.90169 1.21563 1.45240 0.97930 0.92953 0.91393 1.25915 0.95528 1.02764 0.95171 1.70105 1.50131 1.38985 0.98033 0.85538 0.79313 0.79412 0.77036 1.18851 1.21329 1.19224 0.88158 0.87833 0.89209 0.76561 0.89487 0.89765 0.99125 0.98655 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.31 11.10 127.77 1.42 3.73 15 2 N -0.37 -12.42 4.02 -355.96 -1.43 -13.85 15 3 N -0.31 -10.48 12.57 -56.98 -0.72 -11.20 15 4 C 0.08 2.44 12.01 85.25 1.02 3.46 15 5 C -0.27 -9.36 6.52 22.01 0.14 -9.22 15 6 Br -0.02 -0.71 33.48 -20.37 -0.68 -1.39 15 7 C 0.13 4.95 6.19 41.40 0.26 5.20 15 8 C -0.05 -1.93 4.96 29.85 0.15 -1.78 15 9 C 0.05 2.31 4.95 29.85 0.15 2.46 15 10 C -0.54 -29.05 9.11 25.60 0.23 -28.81 15 11 H 0.07 3.44 7.74 -2.91 -0.02 3.42 15 12 C 0.00 0.24 5.46 84.65 0.46 0.70 15 13 N -0.93 -55.64 13.29 21.45 0.28 -55.35 15 14 Si 0.96 42.76 29.54 68.60 2.03 44.79 15 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 15 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 18 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 19 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.09 2.43 7.67 -2.39 -0.02 2.41 15 21 H 0.22 4.93 8.06 -2.91 -0.02 4.91 15 22 H 0.09 3.38 7.76 -2.39 -0.02 3.37 15 23 H 0.08 2.98 7.74 -2.39 -0.02 2.96 15 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 25 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 15 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 15 Total: -1.00 -64.40 254.36 4.49 -59.91 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.17 Total: 1.36 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.83 Total: -24.26 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.86 Total: -80.41 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -0.68 Total: -1.39 kcal Total: -64.40 4.49 -59.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984591.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.232 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds