Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36884 * 126.40101 * 269.68943 * 3 2 1 5 5 Br 1.89108 * 126.59764 * 359.97438 * 4 3 2 6 6 C 1.34764 * 106.80710 * 179.84298 * 4 3 2 7 7 N 1.34162 * 108.01426 * 0.42116 * 6 4 3 8 8 C 1.30478 * 109.26644 * 359.73168 * 7 6 4 9 9 C 1.50696 * 125.64719 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47286 * 270.00113 * 9 8 7 11 11 H 1.08006 * 120.00185 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00333 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99904 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47244 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47332 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.46987 * 239.99818 * 14 12 10 18 18 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 19 19 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 20 20 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 22 22 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 23 23 H 1.08000 * 125.99472 * 180.18999 * 6 4 3 24 24 H 1.09003 * 109.47177 * 30.00252 * 9 8 7 25 25 H 1.09001 * 109.47766 * 149.99915 * 9 8 7 26 26 H 0.97002 * 120.00209 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2948 2.1451 -1.1017 5 35 2.1203 1.6203 -2.9101 6 6 2.7123 3.3441 -0.6498 7 7 2.7000 3.3093 0.6913 8 6 2.2856 2.1373 1.0877 9 6 2.1313 1.6990 2.5212 10 6 3.4193 1.0791 2.9985 11 1 4.2650 1.0091 2.3304 12 6 3.5181 0.6014 4.2881 13 7 2.4885 0.6870 5.1019 14 14 5.1149 -0.1664 4.8799 15 1 6.1129 -0.1424 3.7806 16 1 5.6350 0.6037 6.0382 17 1 4.8659 -1.5714 5.2913 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3635 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.0088 4.1843 -1.2602 24 1 1.8920 2.5628 3.1415 25 1 1.3272 0.9666 2.5928 26 1 2.5579 0.3506 6.0090 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260985487.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = 30.133856 kcal Electronic energy + Delta-G solvation = -12120.860922 eV Core-core repulsion = 9859.734891 eV Total energy + Delta-G solvation = -2261.126031 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.06920 -35.98073 -35.45748 -33.17455 -31.57407 -30.96991 -28.26297 -25.37831 -24.51710 -22.13733 -20.59780 -18.67634 -17.89555 -16.54860 -16.44276 -15.77932 -14.98191 -14.66230 -14.37745 -14.14483 -13.58340 -13.49278 -13.03705 -12.76702 -12.62900 -12.32972 -12.08134 -12.00045 -11.66146 -11.50683 -10.85368 -10.64301 -10.60028 -9.19807 -8.24339 -6.37673 0.23869 0.88372 1.39761 1.42413 1.54220 1.95850 2.10890 2.42098 3.07664 3.71792 3.79495 4.05570 4.10217 4.35003 4.44423 4.70354 4.76910 5.05442 5.14218 5.22637 5.39084 5.65754 5.68264 5.96951 6.21049 6.69212 7.13391 7.31078 8.85019 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.038617 B = 0.006404 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.895725 B = 4370.952685 C = 4483.811424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 N -0.439 5.439 4 C -0.062 4.062 5 Br 0.037 6.963 6 C 0.004 3.996 7 N -0.534 5.534 8 C 0.258 3.742 9 C 0.106 3.894 10 C -0.529 4.529 11 H 0.046 0.954 12 C 0.018 3.982 13 N -0.920 5.920 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.270 1.270 18 H 0.046 0.954 19 H 0.065 0.935 20 H 0.105 0.895 21 H 0.109 0.891 22 H 0.092 0.908 23 H 0.196 0.804 24 H 0.022 0.978 25 H 0.033 0.967 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -2.664 -16.330 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.033 4.033 3 N -0.122 5.122 4 C -0.254 4.254 5 Br 0.119 6.881 6 C -0.148 4.148 7 N -0.254 5.254 8 C -0.006 4.006 9 C 0.068 3.932 10 C -0.568 4.568 11 H 0.064 0.936 12 C -0.182 4.182 13 N -0.559 5.559 14 Si 0.789 3.211 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.195 1.195 18 H 0.065 0.935 19 H 0.084 0.916 20 H 0.123 0.877 21 H 0.127 0.873 22 H 0.111 0.889 23 H 0.213 0.787 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.110 -2.427 -16.317 16.787 hybrid contribution 0.534 -0.661 0.465 0.969 sum -2.576 -3.088 -15.852 16.354 Atomic orbital electron populations 1.22063 0.92383 1.04675 1.02272 1.22160 0.97113 0.78560 1.05434 1.45566 1.48384 1.13599 1.04669 1.23077 1.18403 0.96065 0.87828 1.96609 1.97650 1.92053 1.01771 1.22710 1.04341 0.96960 0.90832 1.70391 1.22315 1.20652 1.12009 1.24018 0.97823 0.86793 0.91933 1.17556 0.97623 0.96083 0.81984 1.21098 0.97897 1.39869 0.97935 0.93561 1.25746 1.00044 0.96042 0.96347 1.70039 1.31799 1.46811 1.07269 0.85401 0.79122 0.78371 0.78165 1.19647 1.20316 1.19485 0.93490 0.91596 0.87668 0.87322 0.88918 0.78687 0.95936 0.94887 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 15 2 C 0.09 2.72 6.32 86.38 0.55 3.27 15 3 N -0.44 -16.75 2.75 -508.17 -1.40 -18.15 15 4 C -0.06 -2.12 7.38 83.11 0.61 -1.51 15 5 Br 0.04 0.91 33.55 -20.37 -0.68 0.23 15 6 C 0.00 0.14 11.84 83.54 0.99 1.13 15 7 N -0.53 -24.96 11.25 -187.99 -2.12 -27.07 15 8 C 0.26 12.05 7.09 138.10 0.98 13.03 15 9 C 0.11 5.59 5.07 29.10 0.15 5.73 15 10 C -0.53 -29.57 9.09 25.60 0.23 -29.34 15 11 H 0.05 2.64 7.74 -2.91 -0.02 2.62 15 12 C 0.02 0.99 5.46 84.65 0.46 1.45 15 13 N -0.92 -52.74 13.29 21.45 0.28 -52.45 15 14 Si 0.96 43.18 29.54 68.60 2.03 45.21 15 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 18 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 19 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.10 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.11 2.76 7.78 -2.39 -0.02 2.74 15 22 H 0.09 3.19 7.66 -2.39 -0.02 3.17 15 23 H 0.20 5.89 8.06 -2.91 -0.02 5.86 15 24 H 0.02 1.30 8.14 -2.39 -0.02 1.28 15 25 H 0.03 1.72 7.71 -2.39 -0.02 1.70 15 26 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 Total: -1.00 -63.37 254.00 3.99 -59.37 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.17 Total: 2.37 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.71 Total: -9.50 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -3.23 Total: -97.67 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 35 Polarization: 0.91 SS G_CDS: -0.68 Total: 0.23 kcal Total: -63.37 3.99 -59.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985487.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.508 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds