Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39861 * 126.04678 * 2 1 4 4 N 1.30832 * 108.21609 * 180.02562 * 3 2 1 5 5 N 1.40083 * 108.23115 * 359.97438 * 4 3 2 6 6 C 1.46500 * 126.03692 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47297 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46998 * 60.02235 * 6 5 4 9 9 C 1.50698 * 109.46840 * 300.02408 * 6 5 4 10 10 H 1.07993 * 120.00472 * 0.02562 * 9 6 5 11 11 C 1.37882 * 119.99554 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00420 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99716 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47049 * 89.99950 * 13 11 9 15 15 H 1.48499 * 109.47170 * 209.99777 * 13 11 9 16 16 H 1.48502 * 109.47245 * 329.99617 * 13 11 9 17 17 C 1.34976 * 107.92447 * 0.24188 * 5 4 3 18 18 Br 1.89104 * 126.13878 * 179.75858 * 17 5 4 19 19 H 1.08995 * 109.47274 * 89.97707 * 1 2 3 20 20 H 1.08999 * 109.46760 * 209.97442 * 1 2 3 21 21 H 1.08994 * 109.47337 * 329.97458 * 1 2 3 22 22 H 1.08003 * 125.88862 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47002 * 179.97438 * 8 6 5 24 24 H 1.08993 * 109.46955 * 300.00226 * 8 6 5 25 25 H 1.09000 * 109.47050 * 60.00054 * 8 6 5 26 26 H 0.97001 * 120.00306 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1308 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5853 -0.6706 -0.0003 6 6 4.7760 -1.5242 -0.0013 7 1 4.4725 -2.5711 -0.0013 8 6 5.6116 -1.2353 1.2474 9 6 5.5972 -1.2392 -1.2323 10 1 5.2657 -0.4964 -1.9426 11 6 6.7719 -1.9270 -1.4517 12 7 7.1759 -2.8313 -0.5865 13 14 7.7896 -1.5743 -2.9779 14 1 8.7667 -0.4957 -2.6830 15 1 8.5170 -2.8040 -3.3829 16 1 6.8941 -1.1430 -4.0812 17 6 2.3040 -1.0950 -0.0050 18 35 1.7255 -2.8953 -0.0134 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5142 22 1 1.9951 2.1576 0.0004 23 1 6.4972 -1.8707 1.2469 24 1 5.9150 -0.1884 1.2474 25 1 5.0175 -1.4413 2.1378 26 1 8.0026 -3.3149 -0.7406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062160.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = 67.328439 kcal Electronic energy + Delta-G solvation = -12204.704320 eV Core-core repulsion = 9945.191167 eV Total energy + Delta-G solvation = -2259.513153 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.54183 -34.77188 -32.19501 -31.90115 -30.07911 -28.57877 -25.53008 -25.26987 -22.32243 -19.53880 -19.49728 -16.56120 -15.95251 -14.59007 -14.47547 -13.47089 -13.34648 -12.75443 -12.73422 -12.40436 -11.76442 -11.57687 -11.18259 -10.95428 -10.79700 -10.70661 -10.61638 -10.29171 -10.07880 -9.77669 -9.37458 -8.61551 -8.44387 -7.66713 -6.24763 -4.32396 1.73367 2.41118 3.22447 3.26536 3.28484 3.32693 3.57106 4.29451 5.05572 5.24729 5.56363 5.78661 5.99311 6.05887 6.27350 6.44342 6.54105 6.71283 6.74031 7.08698 7.25596 7.58348 7.64073 7.89244 7.93903 8.41905 8.72554 9.33584 10.81187 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.008928 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.361997 B = 3135.390610 C = 3580.590272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.229 4.229 3 C 0.019 3.981 4 N -0.259 5.259 5 N -0.301 5.301 6 C 0.269 3.731 7 H 0.069 0.931 8 C -0.146 4.146 9 C -0.523 4.523 10 H 0.067 0.933 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.908 3.092 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.067 3.933 18 Br 0.001 6.999 19 H 0.058 0.942 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.177 0.823 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.014 0.986 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 0.570 2.051 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.244 4.244 3 C -0.165 4.165 4 N -0.083 5.083 5 N -0.084 5.084 6 C 0.171 3.829 7 H 0.087 0.913 8 C -0.205 4.205 9 C -0.562 4.562 10 H 0.085 0.915 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.142 4.142 18 Br 0.083 6.917 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.194 0.806 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.048 0.038 2.085 10.262 hybrid contribution -0.061 0.260 -0.788 0.832 sum -10.108 0.299 1.297 10.196 Atomic orbital electron populations 1.20039 0.89577 1.01787 1.01293 1.19763 0.96650 0.90624 1.17315 1.23560 0.90310 0.98985 1.03651 1.77445 1.20041 0.89560 1.21270 1.49811 1.04963 1.04184 1.49395 1.19560 0.78468 0.88113 0.96772 0.91310 1.22074 1.01874 1.02216 0.94296 1.21167 1.06592 1.22884 1.05525 0.91514 1.24871 0.96971 0.94476 0.97263 1.69849 1.23204 1.24272 1.35415 0.86318 0.79963 0.77836 0.82357 1.20295 1.20906 1.19733 1.22634 0.88782 0.91865 1.10954 1.96624 1.87840 1.09333 1.97938 0.92340 0.92234 0.92067 0.80584 0.87913 0.93633 0.96650 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.16 36.01 0.37 -0.56 15 2 C -0.23 -4.11 6.10 -105.02 -0.64 -4.75 15 3 C 0.02 0.34 11.96 -17.37 -0.21 0.14 15 4 N -0.26 -5.87 12.41 30.62 0.38 -5.49 15 5 N -0.30 -7.06 3.27 -54.22 -0.18 -7.23 15 6 C 0.27 6.84 3.05 -69.08 -0.21 6.63 15 7 H 0.07 1.80 7.06 -51.93 -0.37 1.44 15 8 C -0.15 -3.59 9.23 37.16 0.34 -3.25 15 9 C -0.52 -14.45 8.76 -34.44 -0.30 -14.75 15 10 H 0.07 1.92 7.81 -52.49 -0.41 1.51 15 11 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 12 N -0.89 -24.27 11.32 55.43 0.63 -23.65 15 13 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 15 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 17 C 0.07 1.37 7.34 -17.17 -0.13 1.25 15 18 Br 0.00 0.01 32.41 -68.01 -2.20 -2.19 15 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.76 7.77 -51.93 -0.40 0.36 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.18 2.49 8.06 -52.48 -0.42 2.07 15 23 H 0.10 2.65 6.07 -51.93 -0.32 2.34 15 24 H 0.04 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -28.56 249.83 -6.25 -34.81 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -2.74 Total: -2.57 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.87 Total: -13.58 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.83 Total: -36.37 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.20 Total: -2.19 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.56 -6.25 -34.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062160.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.135 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds