Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39861 * 126.04678 * 2 1 4 4 N 1.30832 * 108.21609 * 180.02562 * 3 2 1 5 5 N 1.40083 * 108.23115 * 359.97438 * 4 3 2 6 6 C 1.46500 * 126.03692 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47297 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46998 * 60.02235 * 6 5 4 9 9 C 1.50698 * 109.46840 * 300.02408 * 6 5 4 10 10 H 1.07993 * 120.00472 * 0.02562 * 9 6 5 11 11 C 1.37882 * 119.99554 * 180.02562 * 9 6 5 12 12 N 1.31515 * 120.00420 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99716 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47049 * 89.99950 * 13 11 9 15 15 H 1.48499 * 109.47170 * 209.99777 * 13 11 9 16 16 H 1.48502 * 109.47245 * 329.99617 * 13 11 9 17 17 C 1.34976 * 107.92447 * 0.24188 * 5 4 3 18 18 Br 1.89104 * 126.13878 * 179.75858 * 17 5 4 19 19 H 1.08995 * 109.47274 * 89.97707 * 1 2 3 20 20 H 1.08999 * 109.46760 * 209.97442 * 1 2 3 21 21 H 1.08994 * 109.47337 * 329.97458 * 1 2 3 22 22 H 1.08003 * 125.88862 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47002 * 179.97438 * 8 6 5 24 24 H 1.08993 * 109.46955 * 300.00226 * 8 6 5 25 25 H 1.09000 * 109.47050 * 60.00054 * 8 6 5 26 26 H 0.97001 * 120.00306 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1308 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5853 -0.6706 -0.0003 6 6 4.7760 -1.5242 -0.0013 7 1 4.4725 -2.5711 -0.0013 8 6 5.6116 -1.2353 1.2474 9 6 5.5972 -1.2392 -1.2323 10 1 5.2657 -0.4964 -1.9426 11 6 6.7719 -1.9270 -1.4517 12 7 7.1759 -2.8313 -0.5865 13 14 7.7896 -1.5743 -2.9779 14 1 8.7667 -0.4957 -2.6830 15 1 8.5170 -2.8040 -3.3829 16 1 6.8941 -1.1430 -4.0812 17 6 2.3040 -1.0950 -0.0050 18 35 1.7255 -2.8953 -0.0134 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5142 22 1 1.9951 2.1576 0.0004 23 1 6.4972 -1.8707 1.2469 24 1 5.9150 -0.1884 1.2474 25 1 5.0175 -1.4413 2.1378 26 1 8.0026 -3.3149 -0.7406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062160.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = 50.622592 kcal Electronic energy + Delta-G solvation = -12205.428740 eV Core-core repulsion = 9945.191167 eV Total energy + Delta-G solvation = -2260.237573 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.08587 -36.65592 -33.93260 -33.42489 -31.61729 -30.25338 -27.46283 -26.77525 -24.05180 -21.25273 -21.00752 -18.51173 -17.74274 -16.44080 -16.05431 -15.14344 -14.90246 -14.33713 -14.14181 -13.78627 -13.48479 -13.11548 -12.87599 -12.81887 -12.59591 -12.46997 -12.24586 -12.15606 -11.69354 -11.28584 -11.25303 -10.65015 -10.09704 -9.17594 -8.28809 -6.44362 0.24862 0.85459 1.37643 1.38822 1.49038 1.84465 1.91206 2.35813 2.99599 3.83594 4.30821 4.37553 4.58825 4.69162 4.74176 4.84749 4.99956 5.15850 5.22161 5.30403 5.51687 5.63690 5.81138 5.98664 6.10073 6.60460 6.86761 7.24925 8.76030 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.008928 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.361997 B = 3135.390610 C = 3580.590272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.217 4.217 3 C 0.029 3.971 4 N -0.305 5.305 5 N -0.331 5.331 6 C 0.275 3.725 7 H 0.056 0.944 8 C -0.132 4.132 9 C -0.544 4.544 10 H 0.046 0.954 11 C 0.029 3.971 12 N -0.907 5.907 13 Si 0.966 3.034 14 H -0.273 1.273 15 H -0.272 1.272 16 H -0.276 1.276 17 C 0.040 3.960 18 Br 0.020 6.980 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.089 0.911 22 H 0.220 0.780 23 H 0.087 0.913 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 1.184 1.730 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.232 4.232 3 C -0.155 4.155 4 N -0.129 5.129 5 N -0.115 5.115 6 C 0.176 3.824 7 H 0.073 0.927 8 C -0.191 4.191 9 C -0.582 4.582 10 H 0.064 0.936 11 C -0.173 4.173 12 N -0.545 5.545 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.201 1.201 17 C -0.167 4.167 18 Br 0.102 6.898 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.108 0.892 22 H 0.236 0.764 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.320 0.644 1.773 11.476 hybrid contribution 0.203 0.099 -0.666 0.703 sum -11.117 0.743 1.107 11.197 Atomic orbital electron populations 1.20178 0.86107 1.03528 1.02659 1.20376 0.98800 0.89450 1.14580 1.24356 0.89096 1.01064 1.01001 1.77366 1.22648 0.89546 1.23325 1.49509 1.05228 1.04434 1.52303 1.19171 0.79312 0.87925 0.95987 0.92684 1.21882 1.01379 1.00911 0.94907 1.21274 1.07707 1.22902 1.06339 0.93591 1.25574 0.97686 0.94175 0.99826 1.69922 1.23570 1.24513 1.36501 0.85432 0.78425 0.78087 0.78981 1.19844 1.19642 1.20074 1.23220 0.88263 0.93757 1.11463 1.96612 1.87284 1.08010 1.97908 0.91004 0.91658 0.89228 0.76351 0.89498 0.94776 0.95335 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.16 71.24 0.72 -0.83 15 2 C -0.22 -7.30 6.10 -20.12 -0.12 -7.43 15 3 C 0.03 1.01 11.96 85.23 1.02 2.03 15 4 N -0.31 -13.73 12.41 -57.03 -0.71 -14.44 15 5 N -0.33 -15.62 3.27 -325.47 -1.06 -16.68 15 6 C 0.28 14.29 3.05 44.25 0.13 14.43 15 7 H 0.06 2.96 7.06 -2.39 -0.02 2.94 15 8 C -0.13 -6.63 9.23 71.98 0.66 -5.97 15 9 C -0.54 -30.65 8.76 25.60 0.22 -30.43 15 10 H 0.05 2.72 7.81 -2.91 -0.02 2.69 15 11 C 0.03 1.55 5.30 84.66 0.45 2.00 15 12 N -0.91 -49.82 11.32 21.45 0.24 -49.58 15 13 Si 0.97 43.44 29.54 68.60 2.03 45.46 15 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 17 C 0.04 1.62 7.34 83.56 0.61 2.24 15 18 Br 0.02 0.68 32.41 -20.37 -0.66 0.02 15 19 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.06 1.46 7.77 -2.39 -0.02 1.44 15 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.22 5.36 8.06 -2.91 -0.02 5.34 15 23 H 0.09 4.59 6.07 -2.39 -0.01 4.58 15 24 H 0.03 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.03 1.28 8.14 -2.39 -0.02 1.27 15 26 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 Total: -1.00 -61.57 249.83 4.72 -56.85 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.18 Total: 2.33 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.71 Total: -23.96 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.53 Total: -80.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 35 Polarization: 0.68 SS G_CDS: -0.66 Total: 0.02 kcal Total: -61.57 4.72 -56.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062160.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.476 kcal (2) G-P(sol) polarization free energy of solvation -61.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds