Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86793 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47314 * 239.99820 * 3 2 1 5 5 H 1.48501 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47108 * 120.00063 * 3 2 1 7 7 C 1.38630 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99994 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00407 * 0.02562 * 7 2 1 10 10 C 1.35802 * 117.00507 * 185.06016 * 9 7 2 11 11 C 1.38878 * 120.01665 * 354.39934 * 10 9 7 12 12 C 1.38041 * 119.99746 * 179.73907 * 11 10 9 13 13 C 1.38795 * 120.02819 * 0.50776 * 12 11 10 14 14 O 1.35942 * 119.98089 * 179.74241 * 13 12 11 15 15 C 1.38735 * 120.03505 * 359.76751 * 13 12 11 16 16 C 1.38141 * 120.00413 * 359.97438 * 15 13 12 17 17 Br 1.89103 * 120.01370 * 179.97438 * 16 15 13 18 18 H 0.96998 * 120.00452 * 0.02562 * 1 2 3 19 19 H 1.08002 * 120.00113 * 359.97438 * 11 10 9 20 20 H 1.08000 * 119.98093 * 180.23404 * 12 11 10 21 21 H 0.96693 * 114.00604 * 270.02577 * 14 13 12 22 22 H 1.08004 * 119.99588 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5047 0.1078 11 6 3.4575 -3.4385 0.0939 12 6 4.2047 -4.5935 0.2084 13 6 3.5703 -5.8223 0.3268 14 8 4.3071 -6.9597 0.4342 15 6 2.1846 -5.8905 0.3350 16 6 1.4355 -4.7350 0.2259 17 35 -0.4533 -4.8276 0.2364 18 1 -0.4851 0.8400 -0.0004 19 1 3.9516 -2.4830 -0.0026 20 1 5.2834 -4.5414 0.2014 21 1 4.5192 -7.3726 -0.4141 22 1 1.6916 -6.8470 0.4267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261229808.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -42.846603 kcal Electronic energy + Delta-G solvation = -11683.555314 eV Core-core repulsion = 9251.138767 eV Total energy + Delta-G solvation = -2432.416547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.968 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.38797 -37.67779 -35.23077 -32.38020 -31.47304 -28.92529 -27.75802 -25.43194 -22.06852 -21.46928 -18.25839 -17.79319 -16.88492 -15.22195 -14.84346 -14.60284 -13.86624 -13.83432 -13.10762 -12.80577 -12.13479 -11.75112 -11.48211 -11.34728 -10.95907 -10.58329 -10.27085 -10.02179 -9.46728 -9.36774 -8.93463 -8.22210 -7.28155 -6.57543 -4.16672 1.77938 1.98523 2.50285 3.06272 3.07632 3.10804 3.85023 4.14380 4.79357 4.92051 5.05360 5.50905 5.57787 5.96586 6.33664 6.42368 6.55863 6.83830 7.02159 7.10547 7.31428 7.82450 8.13618 8.84873 9.47911 10.57914 Molecular weight = 257.97amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.009488 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.581951 B = 2950.335760 C = 4128.510896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.095 0.905 9 O -0.148 6.148 10 C 0.165 3.835 11 C -0.216 4.216 12 C -0.078 4.078 13 C -0.003 4.003 14 O -0.497 6.497 15 C -0.065 4.065 16 C -0.154 4.154 17 Br -0.057 7.057 18 H 0.274 0.726 19 H 0.139 0.861 20 H 0.119 0.881 21 H 0.370 0.630 22 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -7.650 -1.061 8.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.112 0.888 9 O -0.049 6.049 10 C 0.107 3.893 11 C -0.236 4.236 12 C -0.097 4.097 13 C -0.049 4.049 14 O -0.305 6.305 15 C -0.085 4.085 16 C -0.235 4.235 17 Br 0.027 6.973 18 H 0.084 0.916 19 H 0.157 0.843 20 H 0.137 0.863 21 H 0.223 0.777 22 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.968 -7.305 -0.466 7.580 hybrid contribution 1.001 0.696 -0.507 1.321 sum 2.969 -6.609 -0.974 7.311 Atomic orbital electron populations 1.70055 1.05978 1.28168 1.43642 1.25336 0.95877 0.98929 0.96031 0.85752 0.78774 0.79462 0.79320 1.19353 1.20110 1.19327 1.21361 0.91933 0.80642 1.53556 0.88807 1.84078 1.33788 1.11143 1.75851 1.18960 0.90146 0.87496 0.92691 1.21030 0.92830 0.99129 1.10611 1.21137 0.99449 0.91793 0.97306 1.17853 0.88690 0.85603 1.12725 1.84897 1.72906 1.38927 1.33744 1.20848 0.92912 0.96547 0.98215 1.20508 0.89862 0.93434 1.19704 1.96539 1.03859 1.98786 1.98084 0.91640 0.84341 0.86256 0.77700 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.93 13.67 55.48 0.76 -23.17 14 2 C 0.05 1.19 5.49 -17.52 -0.10 1.09 14 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 14 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 7 C -0.40 -10.67 9.48 30.88 0.29 -10.38 14 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 14 9 O -0.15 -4.04 9.09 -0.05 0.00 -4.04 14 10 C 0.17 3.90 6.64 -39.08 -0.26 3.64 14 11 C -0.22 -4.49 9.16 -39.42 -0.36 -4.85 14 12 C -0.08 -1.40 9.98 -39.45 -0.39 -1.80 14 13 C 0.00 -0.06 6.71 -39.19 -0.26 -0.32 14 14 O -0.50 -7.55 13.50 -19.56 -0.26 -7.81 14 15 C -0.06 -1.20 9.72 -39.43 -0.38 -1.59 14 16 C -0.15 -3.31 6.24 -39.35 -0.25 -3.56 14 17 Br -0.06 -1.17 33.16 -68.01 -2.25 -3.43 14 18 H 0.27 7.11 8.31 -40.82 -0.34 6.77 14 19 H 0.14 2.80 5.63 -52.49 -0.30 2.50 14 20 H 0.12 1.81 8.06 -52.49 -0.42 1.39 14 21 H 0.37 3.76 9.06 45.56 0.41 4.17 14 22 H 0.13 2.07 8.06 -52.48 -0.42 1.64 14 LS Contribution 228.04 15.07 3.44 3.44 Total: -1.00 -29.75 228.04 -5.19 -34.94 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -0.14 Total: 3.18 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.71 Total: -17.76 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.76 Total: -23.17 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.26 Total: -11.85 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -2.25 Total: -3.43 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.75 -5.19 -34.94 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261229808.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.903 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds