Wall clock time and date at job start Mon Mar 30 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81408 * 109.46837 * 2 1 4 4 C 1.81397 * 102.99854 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.82022 * 51.66494 * 4 3 2 6 6 C 1.54893 * 110.75475 * 288.32807 * 4 3 2 7 7 C 1.54266 * 104.19500 * 203.74488 * 6 4 3 8 8 C 1.53872 * 106.60044 * 23.61099 * 7 6 4 9 9 H 1.09000 * 110.07390 * 240.69427 * 8 7 6 10 10 N 1.46901 * 110.03430 * 119.28187 * 8 7 6 11 11 C 1.46900 * 110.99831 * 87.83525 * 10 8 7 12 12 C 1.53001 * 109.47506 * 180.02562 * 11 10 8 13 13 C 1.52989 * 109.47366 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47362 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99620 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00337 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46867 * 89.99723 * 18 16 14 20 20 H 1.48504 * 109.47142 * 210.00141 * 18 16 14 21 21 H 1.48501 * 109.46903 * 330.00013 * 18 16 14 22 22 C 1.54266 * 106.59640 * 359.97438 * 8 7 6 23 23 H 1.09001 * 109.47091 * 60.00098 * 1 2 3 24 24 H 1.09005 * 109.46427 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47253 * 299.99654 * 1 2 3 26 26 H 1.08998 * 109.47253 * 240.00346 * 2 1 3 27 27 H 1.08996 * 109.47377 * 120.00276 * 2 1 3 28 28 H 1.09002 * 110.48578 * 85.06966 * 6 4 3 29 29 H 1.08998 * 110.60430 * 322.47853 * 6 4 3 30 30 H 1.09002 * 110.02957 * 264.32709 * 7 6 4 31 31 H 1.08996 * 110.03427 * 142.89930 * 7 6 4 32 32 H 1.00901 * 111.00149 * 323.88472 * 10 8 7 33 33 H 1.09004 * 109.47283 * 300.00277 * 11 10 8 34 34 H 1.09000 * 109.46943 * 59.99864 * 11 10 8 35 35 H 1.08996 * 109.46730 * 300.00549 * 12 11 10 36 36 H 1.09003 * 109.46551 * 59.99589 * 12 11 10 37 37 H 1.09004 * 109.47428 * 300.00190 * 13 12 11 38 38 H 1.09003 * 109.47546 * 60.00290 * 13 12 11 39 39 H 0.96999 * 119.99653 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.48620 * 95.07012 * 22 8 7 41 41 H 1.09004 * 110.48798 * 217.70845 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2505 0.8345 -0.8002 6 6 4.4317 0.9913 1.3739 7 6 5.9060 1.4411 1.4380 8 6 6.0416 2.6405 0.4837 9 1 6.7597 2.4126 -0.3040 10 7 6.4736 3.8303 1.2291 11 6 7.9388 3.8977 1.3098 12 6 8.3497 5.1468 2.0920 13 6 9.8757 5.2167 2.1765 14 6 10.2804 6.4466 2.9475 15 1 9.5246 7.1123 3.3378 16 6 11.6153 6.7229 3.1537 17 7 12.5356 5.9126 2.6781 18 14 12.1169 8.2479 4.1088 19 1 12.2179 7.9167 5.5528 20 1 13.4334 8.7287 3.6179 21 1 11.0981 9.3108 3.9148 22 6 4.6451 2.8774 -0.1275 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.3620 -0.0954 1.4220 29 1 3.8589 1.4456 2.1823 30 1 6.5581 0.6301 1.1135 31 1 6.1608 1.7417 2.4542 32 1 6.0595 3.8508 2.1491 33 1 8.3160 3.0105 1.8185 34 1 8.3563 3.9447 0.3040 35 1 7.9726 6.0342 1.5837 36 1 7.9322 5.0993 3.0978 37 1 10.2525 4.3292 2.6851 38 1 10.2936 5.2640 1.1709 39 1 13.4748 6.1068 2.8235 40 1 4.1058 3.6381 0.4369 41 1 4.7312 3.1674 -1.1747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300383101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:56 Heat of formation + Delta-G solvation = -36.912285 kcal Electronic energy + Delta-G solvation = -16557.744278 eV Core-core repulsion = 13983.107494 eV Total energy + Delta-G solvation = -2574.636783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.76175 -35.26236 -33.18331 -33.07770 -30.97931 -28.93517 -27.63157 -25.35661 -23.81184 -22.39323 -21.02780 -20.48546 -19.72051 -16.73495 -16.41603 -16.06046 -15.57375 -15.11599 -14.72578 -14.51890 -14.23200 -13.84192 -13.55885 -12.99197 -12.82668 -12.36490 -12.14164 -11.95634 -11.92141 -11.72099 -11.32663 -11.26348 -11.18484 -11.01584 -10.81911 -10.66958 -10.54969 -10.42429 -10.04627 -9.67565 -9.30512 -9.02770 -8.32233 -8.12587 -7.89288 -5.97452 -3.99348 1.42195 2.34292 3.33906 3.39895 3.44030 4.14980 4.39303 4.48621 4.55272 4.59310 4.67257 4.76856 5.01042 5.12790 5.22517 5.30570 5.33732 5.38282 5.39560 5.41842 5.47863 5.62622 5.69865 5.77857 5.86056 5.91755 6.00999 6.08463 6.12614 6.34600 6.75045 6.81129 7.16409 7.38754 7.65652 7.71237 7.86238 8.03183 8.46648 9.07918 9.64523 11.14008 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.067490 B = 0.002693 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.779377 B =10394.556135 C =10536.393336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 S -0.256 6.256 4 C -0.061 4.061 5 H 0.090 0.910 6 C -0.113 4.113 7 C -0.152 4.152 8 C 0.087 3.913 9 H 0.080 0.920 10 N -0.684 5.684 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.087 4.087 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.084 0.916 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.884 -13.913 -5.630 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.240 4.240 3 S -0.027 6.027 4 C -0.190 4.190 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.193 4.193 8 C -0.025 4.025 9 H 0.099 0.901 10 N -0.314 5.314 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.126 4.126 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.359 -12.575 -6.216 25.554 hybrid contribution 1.379 -1.154 1.156 2.138 sum -19.980 -13.729 -5.060 24.765 Atomic orbital electron populations 1.21512 0.92363 1.02398 1.03210 1.23286 1.00083 0.95955 1.04706 1.86946 1.05676 1.12239 1.97886 1.24184 0.92229 1.01946 1.00673 0.89200 1.22662 0.96408 1.00299 0.95878 1.22956 0.96147 0.99490 1.00704 1.22178 0.96045 0.88352 0.95917 0.90126 1.60612 1.09626 1.38887 1.22325 1.22154 0.85565 0.98529 1.00687 1.21625 0.99808 0.95332 0.97777 1.19064 0.88565 0.96884 0.97058 1.21265 0.91712 1.08443 1.34210 0.92666 1.25039 0.96801 0.96768 0.95994 1.69969 1.00417 1.37262 1.46006 0.86591 0.77899 0.83397 0.80108 1.20716 1.21249 1.19840 1.22196 0.94490 0.93997 1.01956 0.91722 0.91276 0.91670 0.90363 0.90233 0.91914 0.90261 0.91597 0.91115 0.84207 0.95761 0.91534 0.92547 0.93697 0.96860 0.96595 0.93066 0.89769 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.09 -0.67 6.65 37.16 0.25 -0.42 16 3 S -0.26 -2.55 21.16 -107.50 -2.27 -4.82 16 4 C -0.06 -0.58 3.40 -24.75 -0.08 -0.66 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.11 -1.03 6.27 -25.07 -0.16 -1.19 16 7 C -0.15 -1.59 6.43 -25.61 -0.16 -1.75 16 8 C 0.09 1.04 3.23 -66.60 -0.22 0.82 16 9 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 10 N -0.68 -9.90 6.21 -105.54 -0.66 -10.55 16 11 C 0.06 1.02 5.51 -3.82 -0.02 1.00 16 12 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.09 -0.95 5.99 -25.09 -0.15 -1.10 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 32 H 0.34 4.68 8.15 -39.29 -0.32 4.36 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -30.04 341.52 -10.77 -40.81 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.83 Total: -1.43 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -0.87 Total: -19.51 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.08 Total: -37.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.27 Total: -4.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.04 -10.77 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300383101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.900 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds