Wall clock time and date at job start Mon Mar 30 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81408 * 109.46837 * 2 1 4 4 C 1.81397 * 102.99854 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.82022 * 51.66494 * 4 3 2 6 6 C 1.54893 * 110.75475 * 288.32807 * 4 3 2 7 7 C 1.54266 * 104.19500 * 203.74488 * 6 4 3 8 8 C 1.53872 * 106.60044 * 23.61099 * 7 6 4 9 9 H 1.09000 * 110.07390 * 240.69427 * 8 7 6 10 10 N 1.46901 * 110.03430 * 119.28187 * 8 7 6 11 11 C 1.46900 * 110.99831 * 87.83525 * 10 8 7 12 12 C 1.53001 * 109.47506 * 180.02562 * 11 10 8 13 13 C 1.52989 * 109.47366 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47362 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99620 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00337 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99907 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46867 * 89.99723 * 18 16 14 20 20 H 1.48504 * 109.47142 * 210.00141 * 18 16 14 21 21 H 1.48501 * 109.46903 * 330.00013 * 18 16 14 22 22 C 1.54266 * 106.59640 * 359.97438 * 8 7 6 23 23 H 1.09001 * 109.47091 * 60.00098 * 1 2 3 24 24 H 1.09005 * 109.46427 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47253 * 299.99654 * 1 2 3 26 26 H 1.08998 * 109.47253 * 240.00346 * 2 1 3 27 27 H 1.08996 * 109.47377 * 120.00276 * 2 1 3 28 28 H 1.09002 * 110.48578 * 85.06966 * 6 4 3 29 29 H 1.08998 * 110.60430 * 322.47853 * 6 4 3 30 30 H 1.09002 * 110.02957 * 264.32709 * 7 6 4 31 31 H 1.08996 * 110.03427 * 142.89930 * 7 6 4 32 32 H 1.00901 * 111.00149 * 323.88472 * 10 8 7 33 33 H 1.09004 * 109.47283 * 300.00277 * 11 10 8 34 34 H 1.09000 * 109.46943 * 59.99864 * 11 10 8 35 35 H 1.08996 * 109.46730 * 300.00549 * 12 11 10 36 36 H 1.09003 * 109.46551 * 59.99589 * 12 11 10 37 37 H 1.09004 * 109.47428 * 300.00190 * 13 12 11 38 38 H 1.09003 * 109.47546 * 60.00290 * 13 12 11 39 39 H 0.96999 * 119.99653 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.48620 * 95.07012 * 22 8 7 41 41 H 1.09004 * 110.48798 * 217.70845 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9371 1.5060 -0.0008 5 1 4.2505 0.8345 -0.8002 6 6 4.4317 0.9913 1.3739 7 6 5.9060 1.4411 1.4380 8 6 6.0416 2.6405 0.4837 9 1 6.7597 2.4126 -0.3040 10 7 6.4736 3.8303 1.2291 11 6 7.9388 3.8977 1.3098 12 6 8.3497 5.1468 2.0920 13 6 9.8757 5.2167 2.1765 14 6 10.2804 6.4466 2.9475 15 1 9.5246 7.1123 3.3378 16 6 11.6153 6.7229 3.1537 17 7 12.5356 5.9126 2.6781 18 14 12.1169 8.2479 4.1088 19 1 12.2179 7.9167 5.5528 20 1 13.4334 8.7287 3.6179 21 1 11.0981 9.3108 3.9148 22 6 4.6451 2.8774 -0.1275 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.3620 -0.0954 1.4220 29 1 3.8589 1.4456 2.1823 30 1 6.5581 0.6301 1.1135 31 1 6.1608 1.7417 2.4542 32 1 6.0595 3.8508 2.1491 33 1 8.3160 3.0105 1.8185 34 1 8.3563 3.9447 0.3040 35 1 7.9726 6.0342 1.5837 36 1 7.9322 5.0993 3.0978 37 1 10.2525 4.3292 2.6851 38 1 10.2936 5.2640 1.1709 39 1 13.4748 6.1068 2.8235 40 1 4.1058 3.6381 0.4369 41 1 4.7312 3.1674 -1.1747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300383101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:55 Heat of formation + Delta-G solvation = -53.327765 kcal Electronic energy + Delta-G solvation = -16558.456106 eV Core-core repulsion = 13983.107494 eV Total energy + Delta-G solvation = -2575.348612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72796 -36.76206 -35.00980 -33.65464 -32.72416 -29.77282 -29.05550 -26.94880 -24.46489 -24.07056 -22.17048 -21.66032 -20.94906 -18.50085 -17.53263 -17.14185 -16.55451 -16.36617 -16.03205 -15.71121 -15.41305 -14.91461 -14.50744 -14.31789 -14.02665 -13.66490 -13.44796 -13.29755 -12.86728 -12.77160 -12.58991 -12.45262 -12.41852 -12.30888 -12.13573 -11.97392 -11.75834 -11.55157 -11.52276 -11.35827 -11.03671 -10.75103 -10.55470 -9.30675 -8.65612 -8.20407 -6.31333 0.72845 1.39826 1.41405 1.52804 1.66353 2.40924 3.12537 3.15559 3.51808 3.72273 3.92773 4.04300 4.10341 4.22502 4.28792 4.33721 4.44901 4.51444 4.53295 4.54709 4.61023 4.72824 4.85099 4.87799 4.92066 4.93620 5.00613 5.07936 5.20580 5.21265 5.23137 5.24259 5.27512 5.52506 5.75413 5.85939 6.12581 6.28122 6.50091 6.85574 7.37800 8.91473 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.067490 B = 0.002693 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.779377 B =10394.556135 C =10536.393336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 S -0.300 6.300 4 C -0.050 4.050 5 H 0.100 0.900 6 C -0.105 4.105 7 C -0.148 4.148 8 C 0.086 3.914 9 H 0.078 0.922 10 N -0.687 5.687 11 C 0.074 3.926 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.083 4.083 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.344 0.656 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.050 0.950 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.997 -14.454 -5.268 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.230 4.230 3 S -0.071 6.071 4 C -0.179 4.179 5 H 0.118 0.882 6 C -0.144 4.144 7 C -0.189 4.189 8 C -0.026 4.026 9 H 0.096 0.904 10 N -0.317 5.317 11 C -0.055 4.055 12 C -0.131 4.131 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.122 4.122 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.495 -13.124 -5.855 26.694 hybrid contribution 1.690 -1.028 1.010 2.221 sum -20.806 -14.152 -4.845 25.625 Atomic orbital electron populations 1.21528 0.91602 1.03500 1.02721 1.23356 1.00594 0.93503 1.05535 1.87127 1.06479 1.15557 1.97985 1.24080 0.91617 1.00972 1.01196 0.88174 1.22602 0.95138 1.01247 0.95435 1.22883 0.97290 0.98915 0.99776 1.22232 0.96439 0.87980 0.95908 0.90386 1.60536 1.07555 1.40761 1.22897 1.21832 0.87510 0.96581 0.99573 1.21380 0.95994 0.97037 0.98715 1.18968 0.92073 0.95264 0.94930 1.21706 0.92310 1.09398 1.34703 0.92315 1.26008 0.96809 1.00248 0.96958 1.70097 1.00885 1.39242 1.47164 0.85432 0.77661 0.79152 0.78713 1.19656 1.20659 1.18837 1.22101 0.93818 0.94738 1.01546 0.92168 0.89268 0.92234 0.89424 0.89427 0.90237 0.90793 0.90850 0.91786 0.83666 0.95682 0.92112 0.93078 0.93163 0.99023 0.99064 0.92763 0.91048 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.92 71.98 0.71 -0.70 16 2 C -0.08 -1.02 6.65 71.98 0.48 -0.54 16 3 S -0.30 -5.62 21.16 -56.49 -1.20 -6.81 16 4 C -0.05 -0.86 3.40 31.88 0.11 -0.75 16 5 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.10 -1.71 6.27 31.67 0.20 -1.51 16 7 C -0.15 -2.86 6.43 31.32 0.20 -2.66 16 8 C 0.09 1.96 3.23 45.64 0.15 2.11 16 9 H 0.08 1.84 7.81 -2.39 -0.02 1.82 16 10 N -0.69 -19.43 6.21 -487.83 -3.03 -22.46 16 11 C 0.07 2.55 5.51 86.30 0.48 3.03 16 12 C -0.09 -3.94 5.41 30.59 0.17 -3.77 16 13 C 0.03 1.36 4.97 29.84 0.15 1.51 16 14 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 17 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 18 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.08 -1.74 5.99 31.66 0.19 -1.55 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.34 7.56 -2.39 -0.02 1.33 16 32 H 0.34 9.21 8.15 -89.69 -0.73 8.48 16 33 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 41 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -64.31 341.52 1.84 -62.47 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.23 Total: 13.12 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.52 Total: -35.97 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.75 Total: -79.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -1.20 Total: -6.81 kcal Total: -64.31 1.84 -62.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300383101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.144 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds